Information on SUBCLASS 5.29.1 |
Subclass Accession number: 753
Subclass: 5.29.1 Type: HA beta-beta hairpin DB: ArchDB40 Image coordinates: Consensus coordinates: Conserved Annotation EC : 4.1 (>50 %) 4.1.1 (>50 %) GO : GO:0003723 (>50 %) GO:0003735 (>50 %) GO:0004497 (>50 %) GO:0016829 (>50 %) GO:0016830 (>50 %) GO:0016831 (>50 %) GO:0019843 (>50 %) SCOP : 50192 (>50 %) 50193 (>50 %) 50194 (>50 %) |
Number of loops: 3 Average sequence ID (%) : 33.3 +/- 20.1 Average RMSD (Å) : 1.167 +/- 0.462 Consensus geometry
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Consensus Sequence: | phXpppGXp |
(φψ)-conformation: | pbabaagba |
Pattern: | x | [ILT] | [KT] | [CVY] | [AQ] | [DH] | [NS] | [ST] | [G] | [AT] | [NR] | [ER] | [ILV] | x | [V] | [IT] | [KST] | [V] |
Conservation: | -1.370 | -0.843 | -0.205 | -0.930 | -0.599 | 0.350 | 0.591 | 0.191 | 2.759 | -0.217 | 0.192 | 0.061 | 0.124 | -1.106 | 1.178 | -0.599 | -0.755 | 1.178 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1jj2_J_17 | 1jj2 | J | 17 | 34 | LITCADNTGARELKVISV | EEEE-BSSSEEEEEEEEE | bbxxabaagbabbbxabb |
1m2o_A_484 | 1m2o | A | 490 | 507 | ITTYQHSSGTNRIRVTTV | EEEEEETTTEEEEEEEEE | bbxbxxaagbxbbxbbbb |
1whi_*_7 | 1whi | - | 7 | 24 | RLKVADNSGAREVLVIKV | EEEE-BSSSEEEEEEEEE | xbxbabaagxabbbxabx |
PDB Site Annotated loops in this subclass |
Loop | PDB | Chain | Site | Residue |
1whi_*_7 | 1whi | * | R2A SECOND SITE IS PROPOSED TO INTERACT WITH 23S RRNA. IT IS LOCATED BETWEEN THE BETA BARREL AND THE C TERMINAL HELICAL DOMAIN. | N - 13 |
Clusters included in this Subclass |
CLUSTER: HA.4.170 |