ArchDB - Biological DataBase of Protein Loops

Grup de Recerca en Informàtica Biomèdica

Information on SUBCLASS 6.9.1

Subclass Accession number: 7534
Subclass: 6.9.1

PSSM

Type: EH beta-alpha
DB: ArchDB-EC

Image coordinates:

Rasmol PDB

Jmol PDB

Consensus coordinates:

Rasmol PDB

Jmol PDB

Number of loops: 7

Average sequence ID (%) : 29.7 +/- 23.9
Average RMSD (Å) : 0.457 +/- 0.151

Consensus geometry

d (Å): 11

delta (°): 90-135

theta (°): 135-180

rho (°): 0-45

Consensus Sequence:	hhHGhhhpXp
(φψ)-conformation:	bbpppwbbaa

Pattern:	[IV]	[IV]	[FLMVW]	[hilv]	[H]	[G]	[FILW]	[FGP]	[agl]	[ADNS]	[AGRS]	[dhy]	[ADNS]	[FW]	[adeqr]	[dhnprs]	x	[aklm]	x	[AFY]	[FILV]	x
Conservation:	0.884	0.821	-0.279	-0.627	2.916	1.976	-0.125	-0.559	-1.020	-0.146	-0.384	-0.304	-0.175	1.364	-0.620	-0.766	-0.540	-0.599	-0.875	-0.219	0.110	-0.834

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1a88_A_23	1a88	A	24	45	VVFHHGWPLSADDWDNQMLFFL	EEEE--TT--GGGGHHHHHHHH	bbbbxxxwxbaaaaaaaaaaaa
1a8q_*_21	1a8q	-	22	43	VVFIHGWPLNGDAWQDQLKAVV	EEEE--TT--GGGGHHHHHHHH	bbbbxbxwbbaaaaaaaaaaaa
1a8s_*_21	1a8s	-	22	43	IVFSHGWPLNADSWESQMIFLA	EEEE--TT--GGGGHHHHHHHH	bbbbxxxwxbaaaaaaaaaaaa
1auo_A_15	1auo	A	17	38	VIWLHGLGADRYDFMPVAEALQ	EEEE--TT--TTTTHHHHHHHH	bxbxxxpvbbaaaaaaaaaaaa
1brt_*_25	1brt	-	26	47	VVLIHGFPLSGHSWERQSAALL	EEEE--TT--GGGGHHHHHHHH	bbbbxbxwbbaaaaaaaaaaaa
1isp_A_6	1isp	A	6	27	VVMVHGIGGASFNFAGIKSYLV	EEEE--TT--GGGGHHHHHHHH	bbbbxxxvxbaaaaaaaaaaaa
1pja_A_39	1pja	A	39	60	VIVVHGLFDSSYSFRHLLEYIN	EEEE--TT--GGGGHHHHHHHH	bbbbxbplbbaaaaaaaaaaaa

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1a8s_*_21	1a8s	*	PPIPROPANOIC ACID	H - 26
1a8s_*_21	1a8s	*	PPIPROPANOIC ACID	G - 27
1a8s_*_21	1a8s	*	PPIPROPANOIC ACID	W - 28
1a8s_*_21	1a8s	*	PPIPROPANOIC ACID	P - 29
1isp_A_6	1isp	A	GOLGLYCEROL	H - 10
1isp_A_6	1isp	A	GOLGLYCEROL	G - 11
1isp_A_6	1isp	A	GOLGLYCEROL	I - 12
1isp_A_6	1isp	A	GOLGLYCEROL	G - 13
1isp_A_6	1isp	A	GOLGLYCEROL	G - 14
1isp_A_6	1isp	A	GOLGLYCEROL	A - 15
1isp_A_6	1isp	A	GOLGLYCEROL	N - 18
1pja_A_39	1pja	A	GOLGLYCEROL	L - 45

Clusters included in this Subclass

CLUSTER: EH.9.4