ArchDB - Biological DataBase of Protein Loops

Information on SUBCLASS 11.13.1

Subclass Accession number: 7672
Subclass: 11.13.1

Type: EH beta-alpha
DB: ArchDB-EC

Image coordinates:

Consensus coordinates:

Number of loops: 3

Average sequence ID (%) : 42.0 +/- 11.8
Average RMSD (Å) : 0.333 +/- 0.058

Consensus geometry

d (Å): 19

delta (°): 90-135

theta (°): 135-180

rho (°): 0-45

Consensus Sequence:	hhXSchphGpXPDXR
(φψ)-conformation:	bbapaaaplppppaa

Pattern:	[NW]	x	[IV]	[D]	[S]	[AFG]	[AG]	[TV]	[S]	[DGN]	[WY]	[EHN]	[IV]	[G]	[ENR]	[PS]	[P]	[D]	x	[R]	[AGT]	x	[S]	[CI]	[CLM]	[KR]	[NQR]
Conservation:	-0.031	-1.355	0.163	1.588	0.436	-1.483	-0.483	-0.431	0.436	-0.715	1.141	-0.523	0.163	1.588	-0.843	-0.671	2.164	1.588	-0.843	1.012	-1.163	-1.117	0.436	0.177	-0.715	0.197	-0.715

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1d1q_A_40	1d1q	A	41	67	NKIDSFGTSNYHVGESPDHRTVSICKQ	EEEEEEESS-TTBT----HHHHHHHHH	abbbbbbaxaaapvxxxpaaaaaaaaa
1dg9_A_39	1dg9	A	39	65	WVIDSGAVSDWNVGRSPDPRAVSCLRN	EEEEEEES-STTTT----HHHHHHHHH	bbbbbbbaxaaapvxxxpaaaaaaaaa
5pnt_*_39	5pnt	-	39	65	WRVDSAATSGYEIGNPPDYRGQSCMKR	EEEEEEESSSTTTT----HHHHHHHHH	bbbbbbbabaaapvxxppaaaaaaaaa

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1d1q_A_40	1d1q	A	4NP4-NITROPHENYL PHOSPHATE	F - 46
1d1q_A_40	1d1q	A	4NP4-NITROPHENYL PHOSPHATE	H - 52
1dg9_A_39	1dg9	A	EPE4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID	W - 49
1dg9_A_39	1dg9	A	EPE4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID	N - 50
5pnt_*_39	5pnt	*	MES2-(N-MORPHOLINO)-ETHANESULFONIC ACID	Y - 49
5pnt_*_39	5pnt	*	MES2-(N-MORPHOLINO)-ETHANESULFONIC ACID	E - 50

Clusters included in this Subclass