|
|
|
|
|
|
|
| Information on SUBCLASS 5.4.1 |
|
Subclass Accession number: 7936
Subclass: 5.4.1 
Type: HA beta-beta hairpin DB: ArchDB-EC Image coordinates: 
 Consensus coordinates:
|
Number of loops: 5 Average sequence ID (%) : 18.0 +/- 23.8 Average RMSD (Å) : 1.180 +/- 0.179 Consensus geometry
|
| Consensus Sequence: | XpDpXGpXX |
| (φψ)-conformation: | bbpaalpbb |
| Pattern: | [EST] | [agq] | [eky] | [DT] | [EKS] | [adnv] | [GM] | [KNQ] | [ast] | x | [kry] | [FLTV] | [lty] | x | [hiv] |
| Conservation: | 0.580 | -0.667 | -0.656 | 2.139 | 0.867 | -0.959 | 1.474 | 0.980 | 0.045 | -1.259 | -0.633 | -0.196 | -0.196 | -0.450 | -1.069 |
| Loops included in this Subclass |
| Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
| 1h4i_A_311 | 1h4i | A | 314 | 328 | EQKDKDGKARKLLTH | EEE-TTS-EEEEEEE | bbxxaavxxbbbbbb |
| 1jqp_A_49 | 1jqp | A | 49 | 63 | TAYDEVGNSGYFTLI | EEE-SSS-EEEEEEE | xbbxaavxbbbbbxb |
| 1kgy_A_52 | 1kgy | A | 55 | 69 | SGYDENMNTIRTYQV | EE--TT---EEEEEE | xbbbaalxxbxbbbb |
| 1lrw_A_311 | 1lrw | A | 314 | 328 | EQEDKQGQMRKLLTH | EEE-TTS-EEEEEEE | bbxpaavbxbxbbbb |
| 1qq4_A_146 | 1qq4 | A | 146 | 160 | SWITSAGQAQGVMSG | EEE-TT-BEEEEEEE | xbbxaavxxaebpab |
| PDB ligands within a cut-off distance of 6 Å in this subclass |
| Loop | PDB | Chain | Ligands | Residue |
| 1qq4_A_146 | 1qq4 | A | GOLGLYCEROL | S - 159 |
| 1qq4_A_146 | 1qq4 | A | GOLGLYCEROL | G - 160 |
| 1qq4_A_146 | 1qq4 | A | GOLGLYCEROL | G - 161 |
| Clusters included in this Subclass |
| CLUSTER: HA.4.58 |
| CLUSTER: HA.6.44 |
| For any comment or web-related incidence, send an email to the webmaster. |
|