Information on SUBCLASS 5.28.1 |
Subclass Accession number: 7966
Subclass: 5.28.1 Type: HA beta-beta hairpin DB: ArchDB-EC Image coordinates: Consensus coordinates: |
Number of loops: 3 Average sequence ID (%) : 81.5 +/- -49.4 Average RMSD (Å) : 0.200 +/- 0.100 Consensus geometry
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Consensus Sequence: | WhNEEDHXR |
(φψ)-conformation: | bblFababb |
Pattern: | [F] | [L] | [IV] | [W] | [IV] | [N] | [E] | [E] | [D] | [H] | [LT] | [R] | [IV] | [I] | [S] | [M] | [EQ] | [K] |
Conservation: | 0.497 | -0.484 | -0.728 | 2.950 | -0.726 | 0.497 | 0.007 | 0.007 | 0.497 | 1.479 | -1.597 | 0.007 | -0.726 | -0.484 | -0.484 | 0.007 | -0.727 | 0.007 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1m15_A_218 | 1m15 | A | 218 | 235 | FLVWVNEEDHLRIISMQK | EEEEESSSSSEEEEEEEE | bbbxbvFababbbbbbbx |
1qh4_A_225 | 1qh4 | A | 225 | 242 | FLVWINEEDHLRVISMQK | EEEEESSSSSEEEEEEEE | bbbxbvFababbbbbbbx |
1qk1_A_220 | 1qk1 | A | 220 | 237 | FLIWVNEEDHTRVISMEK | EEEEESSSSSEEEEEEEE | bbbbbvFababbbbbbbx |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1m15_A_218 | 1m15 | A | MGMAGNESIUM ION | W - 221 |
1m15_A_218 | 1m15 | A | ADPADENOSINE-5'-DIPHOSPHATE | W - 221 |
1m15_A_218 | 1m15 | A | MGMAGNESIUM ION | E - 224 |
1m15_A_218 | 1m15 | A | ADPADENOSINE-5'-DIPHOSPHATE | E - 224 |
1m15_A_218 | 1m15 | A | MGMAGNESIUM ION | E - 225 |
1m15_A_218 | 1m15 | A | ARGARGININE | E - 225 |
1m15_A_218 | 1m15 | A | ADPADENOSINE-5'-DIPHOSPHATE | E - 225 |
1m15_A_218 | 1m15 | A | MGMAGNESIUM ION | R - 229 |
1m15_A_218 | 1m15 | A | ARGARGININE | R - 229 |
1m15_A_218 | 1m15 | A | ADPADENOSINE-5'-DIPHOSPHATE | R - 229 |
1m15_A_218 | 1m15 | A | ADPADENOSINE-5'-DIPHOSPHATE | I - 231 |
1m15_A_218 | 1m15 | A | ADPADENOSINE-5'-DIPHOSPHATE | M - 233 |
1m15_A_218 | 1m15 | A | ADPADENOSINE-5'-DIPHOSPHATE | Q - 234 |
1qk1_A_220 | 1qk1 | A | PO4PHOSPHATE ION | W - 223 |
1qk1_A_220 | 1qk1 | A | PO4PHOSPHATE ION | E - 227 |
1qk1_A_220 | 1qk1 | A | PO4PHOSPHATE ION | R - 231 |
1qk1_A_220 | 1qk1 | A | PO4PHOSPHATE ION | I - 233 |
Clusters included in this Subclass |
CLUSTER: HA.4.123 |