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Information on SUBCLASS 5.28.1
Subclass Accession number: 7966
Subclass: 5.28.1 PSSM
Type: HA beta-beta hairpin
DB: ArchDB-EC

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 3

Average sequence ID (%) : 81.5 +/- -49.4
Average RMSD (Å) : 0.200 +/- 0.100

Consensus geometry
d (Å): 3 delta (°): 90-135 theta (°): 135-180 rho (°): 0-45
Consensus Sequence: WhNEEDHXR
(φψ)-conformation: bblFababb
Pattern: [F][L][IV][W][IV][N][E][E][D][H][LT][R][IV][I][S][M][EQ][K]
Conservation:0.497-0.484-0.7282.950-0.7260.4970.0070.0070.4971.479-1.5970.007-0.726-0.484-0.4840.007-0.7270.007
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1m15_A_2181m15   A218235FLVWVNEEDHLRIISMQKEEEEESSSSSEEEEEEEEbbbxbvFababbbbbbbx
1qh4_A_2251qh4   A225242FLVWINEEDHLRVISMQKEEEEESSSSSEEEEEEEEbbbxbvFababbbbbbbx
1qk1_A_2201qk1   A220237FLIWVNEEDHTRVISMEKEEEEESSSSSEEEEEEEEbbbbbvFababbbbbbbx
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1m15_A_2181m15   A     MGMAGNESIUM ION W - 221
1m15_A_2181m15   A     ADPADENOSINE-5'-DIPHOSPHATE W - 221
1m15_A_2181m15   A     MGMAGNESIUM ION E - 224
1m15_A_2181m15   A     ADPADENOSINE-5'-DIPHOSPHATE E - 224
1m15_A_2181m15   A     MGMAGNESIUM ION E - 225
1m15_A_2181m15   A     ARGARGININE E - 225
1m15_A_2181m15   A     ADPADENOSINE-5'-DIPHOSPHATE E - 225
1m15_A_2181m15   A     MGMAGNESIUM ION R - 229
1m15_A_2181m15   A     ARGARGININE R - 229
1m15_A_2181m15   A     ADPADENOSINE-5'-DIPHOSPHATE R - 229
1m15_A_2181m15   A     ADPADENOSINE-5'-DIPHOSPHATE I - 231
1m15_A_2181m15   A     ADPADENOSINE-5'-DIPHOSPHATE M - 233
1m15_A_2181m15   A     ADPADENOSINE-5'-DIPHOSPHATE Q - 234
1qk1_A_2201qk1   A     PO4PHOSPHATE ION W - 223
1qk1_A_2201qk1   A     PO4PHOSPHATE ION E - 227
1qk1_A_2201qk1   A     PO4PHOSPHATE ION R - 231
1qk1_A_2201qk1   A     PO4PHOSPHATE ION I - 233

Clusters included in this Subclass
CLUSTER: HA.4.123