Information on SUBCLASS 5.2.2 |
Subclass Accession number: 8555
Subclass: 5.2.2 Type: HE alpha-beta DB: ArchDB-EC Image coordinates: Consensus coordinates: |
Number of loops: 3 Average sequence ID (%) : 3.5 +/- 5.0 Average RMSD (Å) : 1.200 +/- 0.529 Consensus geometry
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Consensus Sequence: | XXhXXppXX |
(φψ)-conformation: | aappaapbb |
Pattern: | x | [EGR] | x | [FLW] | x | [FR] | x | x | x | [FKM] | [AFL] | [APS] | [DEP] | [DH] | [KST] | x | x | [AVY] | x |
Conservation: | -0.781 | -0.210 | -1.066 | 1.359 | -0.923 | 0.644 | -0.923 | -1.066 | 0.075 | -0.210 | -0.210 | 0.503 | 1.217 | 2.642 | 0.646 | -1.351 | -0.210 | -0.067 | -0.067 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1f0y_A_112 | 1f0y | A | 116 | 134 | NELFKRLDKFAAEHTIFAS | HHHHHHHTTTS-TT-EEEE | aaaaaaaaaaxpaapxbbb |
1k4g_A_237 | 1k4g | A | 241 | 259 | FRVLDFSVPMLPDDKPHYL | HHHHHHHGGGS-TTS-EEE | aaaaaaaaaaxpaabxbbx |
1req_B_217 | 1req | B | 217 | 235 | LGDWVRRLAKFSPDSRAVT | HHHHHHHTSSS-TT-EEEE | aaaaaaaaaaxpaaxbabb |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1f0y_A_112 | 1f0y | A | NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE | V - 114 |
1f0y_A_112 | 1f0y | A | NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE | K - 115 |
1f0y_A_112 | 1f0y | A | NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE | L - 118 |
1k4g_A_237 | 1k4g | A | AIQ2,6-DIAMINO-8-(1H-IMIDAZOL-2-YLSULFANYLMETHYL)-3H-QUINAZOLINE-4-ONE | Y - 258 |
Clusters included in this Subclass |
CLUSTER: HE.8.93 |