Information on SUBCLASS 5.14.1 |
Subclass Accession number: 8590
Subclass: 5.14.1 Type: HE alpha-beta DB: ArchDB-EC Image coordinates: Consensus coordinates: |
Number of loops: 5 Average sequence ID (%) : 18.4 +/- 16.5 Average RMSD (Å) : 0.900 +/- 0.339 Consensus geometry
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Consensus Sequence: | phGpXchXh |
(φψ)-conformation: | aalbaapbb |
Pattern: | [GIMV] | [AGIP] | [avy] | [AILM] | [akr] | [ADEK] | x | [FL] | [DEKRS] | [AEKS] | [AGIL] | [G] | [hnr] | [DEPT] | [DKNS] | [ILV] | x | [AILV] | [CKMTV] |
Conservation: | -0.377 | -0.917 | -0.897 | 0.059 | -0.493 | -0.060 | -0.674 | 0.969 | -0.213 | -0.068 | -0.812 | 3.449 | -0.111 | -0.109 | 0.044 | 1.080 | -0.327 | 0.238 | -0.778 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1bia_*_147 | 1bia | - | 154 | 172 | GIVMAEVLRKLGADKVRVK | HHHHHHHHHHTT-TT-EEE | aaaaaaaaaaavbaaxbbb |
1d9e_A_1148 | 1d9e | A | 1148 | 1166 | MGNIVDKFKEGGNEKVILC | HHHHHHHHHHTT---EEEE | aaaaaaaaaaavbaaxbbb |
1gzg_A_181 | 1gzg | A | 182 | 200 | IGAIREALESAGHTNVRVM | HHHHHHHHHHTT-TT-EEE | aaaaaaaaaaavxaaxxbx |
1req_A_661 | 1req | A | 665 | 683 | VPALRKELDKLGRPDILIT | HHHHHHHHHHTT-TTSEEE | aaaaaaaaaaavbaaxxbb |
1tml_*_194 | 1tml | - | 198 | 216 | VAYAKAVLSAIGNPSLRAV | HHHHHHHHHHHT-TT-EEE | aaaaaaaaaaavbaaxbbb |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1gzg_A_181 | 1gzg | A | MGMAGNESIUM ION | R - 181 |
1gzg_A_181 | 1gzg | A | LAF5-FLUOROLEVULINIC ACID | Y - 202 |
1gzg_A_181 | 1gzg | A | MGMAGNESIUM ION | Y - 202 |
1gzg_A_181 | 1gzg | A | MGMAGNESIUM ION | S - 203 |
1gzg_A_181 | 1gzg | A | LAF5-FLUOROLEVULINIC ACID | K - 205 |
1req_A_661 | 1req | A | B12COBALAMIN | T - 683 |
1req_A_661 | 1req | A | B12COBALAMIN | V - 684 |
1req_A_661 | 1req | A | B12COBALAMIN | G - 685 |
1req_A_661 | 1req | A | B12COBALAMIN | G - 686 |
PDB Site Annotated loops in this subclass |
Loop | PDB | Chain | Site | Residue |
1gzg_A_181 | 1gzg | A | MGAMG BINDING SITE FOR CHAIN A | R - 181 |
1gzg_A_181 | 1gzg | A | LA1LAF BINDING SITE FOR CHAIN A | K - 205 |
Clusters included in this Subclass |
CLUSTER: HE.5.148 |
CLUSTER: HE.7.152 |