ArchDB - Biological DataBase of Protein Loops

Grup de Recerca en Informàtica Biomèdica

Information on SUBCLASS 8.2.1

Subclass Accession number: 8714
Subclass: 8.2.1

PSSM

Type: HE alpha-beta
DB: ArchDB-EC

Image coordinates:

Rasmol PDB

Jmol PDB

Consensus coordinates:

Rasmol PDB

Jmol PDB

Number of loops: 12

Average sequence ID (%) : 20.5 +/- 20.0
Average RMSD (Å) : 0.650 +/- 0.371

Consensus geometry

d (Å): 17

delta (°): 90-135

theta (°): 135-180

rho (°): 315-360

Consensus Sequence:	XXGhpXpXhXhh
(φψ)-conformation:	aalbpaaapabb

Pattern:	x	[aegkr]	[aitv]	[cilmv]	[adeknst]	[adgknr]	[anrst]	[GN]	[iklv]	[adeknqrs]	x	[ADEGKQRS]	x	[ILV]	[dgnqs]	[gilpvwy]	[fgilv]	x
Conservation:	-0.990	-0.199	-0.027	0.457	-0.160	-0.583	-0.366	3.118	0.288	-0.400	-0.758	-0.256	-0.178	1.756	-0.123	-1.210	-0.243	-0.126

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1afw_A_318	1afw	A	324	341	PKVLEATGLQVQDIDIFE	HHHHHHHT--GGG-SEEE	aaaaaaavbbaaaxabbb
1dj3_A_263	1dj3	A	263	280	GGICTGLGIAPRVIGDLI	HHHHHHH---GGG---EE	aaaaaaavbxaaaxFxbx
1e5m_A_281	1e5m	A	288	305	AWALKDSGLKPEMVSYIN	HHHHHHHT--GGG--EEE	aaaaaaavbxaaaxabbx
1hnj_A_209	1hnj	A	225	242	DETLAANNLDRSQLDWLV	HHHHHHTT--GGG--EEE	aaaaaaalbbaaaxabbb
1hnj_A_51	1hnj	A	60	77	TRAIEMAGIEKDQIGLIV	HHHHHHHT--GGG--EEE	aaaaaaavbxaaaxabbb
1hzp_A_209	1hzp	A	225	242	RRAMDAAGVRPDQIDVFV	HHHHHHTT--GGG--EEE	aaaaaaavbxaaaxabbb
1hzp_A_51	1hzp	A	60	77	RRALSNAGLSAADIDGVI	HHHHHHTT--GGG--EEE	aaaaaaavbbaaaxabbb
1m3k_A_27	1m3k	A	36	53	SAVLERAGVAAGEVNEVI	HHHHHHHT--GGG--EEE	aaaaaaavbxaaaxabbb
1m3k_A_292	1m3k	A	297	314	RKALERAGWKIGDLDLVE	HHHHHHHT--GGG-SEEE	aaaaaaavbxaaaxabbb
1mzj_A_60	1mzj	A	69	86	RRALEHAGVDPAEIDLVV	HHHHHHHT--GGG--EEE	aaaaaaavbxaaaxabbb
1o98_A_216	1o98	A	220	237	IEDSYKHGIYDEFVLPSV	HHHHHHTT--GGG---EE	aaaaaaavbxaaapxwbb
1p4k_A_228	1p4k	A	240	257	VKIVNRRGKNLKDIQVGF	HHHHHHTT--GGG--EEE	aaaaaaavbxaaabbbbb

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1hnj_A_209	1hnj	A	MLCMALONYL-COENZYME A	G - 209
1hnj_A_209	1hnj	A	MLCMALONYL-COENZYME A	N - 210
1hnj_A_209	1hnj	A	MLCMALONYL-COENZYME A	E - 211
1hnj_A_209	1hnj	A	MLCMALONYL-COENZYME A	V - 212
1hnj_A_209	1hnj	A	MLCMALONYL-COENZYME A	F - 213
1hnj_A_209	1hnj	A	MLCMALONYL-COENZYME A	A - 216
1hzp_A_51	1hzp	A	GOLGLYCEROL	S - 53
1hzp_A_51	1hzp	A	GOLGLYCEROL	R - 61
1hzp_A_209	1hzp	A	DAOLAURIC ACID	G - 209
1hzp_A_209	1hzp	A	DAOLAURIC ACID	P - 210
1hzp_A_209	1hzp	A	DAOLAURIC ACID	V - 212
1hzp_A_209	1hzp	A	DAOLAURIC ACID	F - 213
1hzp_A_209	1hzp	A	GOLGLYCEROL	D - 222
1hzp_A_209	1hzp	A	GOLGLYCEROL	R - 225
1hzp_A_209	1hzp	A	GOLGLYCEROL	R - 226
1hzp_A_209	1hzp	A	GOLGLYCEROL	D - 229
1m3k_A_292	1m3k	A	SULSULFATE ANION	K - 298
1m3k_A_292	1m3k	A	SULSULFATE ANION	E - 301
1m3k_A_292	1m3k	A	SULSULFATE ANION	R - 302

Clusters included in this Subclass

CLUSTER: HE.10.5

CLUSTER: HE.8.5

CLUSTER: HE.9.2