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Information on SUBCLASS 0.1.15
Subclass Accession number: 873
Subclass: 0.1.15 PSSM
Type: EH beta-alpha
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB

Conserved Annotation
GO : GO:0016829 (>75 %)  
SCOP : 51366 (>75 %)  
Number of loops: 11

Average sequence ID (%) : 19.2 +/- 21.0
Average RMSD (Å) : 0.345 +/- 0.093

Consensus geometry
d (Å): 7 delta (°): 0-45 theta (°): 45-90 rho (°): 225-270
Consensus Sequence: Xhhp
(φψ)-conformation: bbaa
Pattern: [agkv][AFILV]x[AFIMV][acgi][RST][ADNSV][AFILVY]x
Conservation:-0.6051.097-1.1410.804-0.1471.016-0.2110.829-1.642
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1a53_*_2291a53   -229237AFLIGSSLMEEEE-HHHHbbbbaaaaa
1ct5_A_2371ct5   A237245EVRIGTDIFEEEESHHHHbbbbaaaaa
1gvo_A_3191gvo   A319327AVAFGRDYIEEEESHHHHbbbbaaaaa
1h7w_A_8121h7w   A812820VLQVCSAVQEEEESHHHHbbxbaaaaa
1km4_A_1981km4   A198206AIIVGRSIYEEEE-HHHHbbbbaaaaa
1ojx_A_2271ojx   A227235GIAVGRNVWEEEESHHHHebbbaaaaa
1q6o_A_1871q6o   A187195VFIAGRSIREEEESHHHHbbbbaaaaa
1thf_D_2201thf   D220228AALAASVFHEEEESHHHHbbxbaaaaa
1thf_D_991thf   D99107KVSINTAAVEEEESHHHHbbbbaaaaa
1vc4_A_2321vc4   A232240AVLIGTSLMEEEE-HHHHbbbbaaaaa
2tps_A_2042tps   A204212GVSMISAISEEEESHHHHbbbbaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1a53_*_2291a53   *     IGPINDOLE-3-GLYCEROL PHOSPHATE L - 231
1a53_*_2291a53   *     IGPINDOLE-3-GLYCEROL PHOSPHATE I - 232
1a53_*_2291a53   *     IGPINDOLE-3-GLYCEROL PHOSPHATE G - 233
1a53_*_2291a53   *     IGPINDOLE-3-GLYCEROL PHOSPHATE S - 234
1a53_*_2291a53   *     IGPINDOLE-3-GLYCEROL PHOSPHATE S - 235
1ct5_A_2371ct5   A     MSESELENOMETHIONINE E - 237
1ct5_A_2371ct5   A     MSESELENOMETHIONINE V - 238
1ct5_A_2371ct5   A     MSESELENOMETHIONINE R - 239
1ct5_A_2371ct5   A     PLPPYRIDOXAL-5'-PHOSPHATE R - 239
1ct5_A_2371ct5   A     MSESELENOMETHIONINE I - 240
1ct5_A_2371ct5   A     PLPPYRIDOXAL-5'-PHOSPHATE I - 240
1ct5_A_2371ct5   A     PLPPYRIDOXAL-5'-PHOSPHATE G - 241
1ct5_A_2371ct5   A     PLPPYRIDOXAL-5'-PHOSPHATE T - 242
1ct5_A_2371ct5   A     MSESELENOMETHIONINE D - 243
1ct5_A_2371ct5   A     PLPPYRIDOXAL-5'-PHOSPHATE D - 243
1gvo_A_3191gvo   A     FMNFLAVIN MONONUCLEOTIDE A - 321
1gvo_A_3191gvo   A     FMNFLAVIN MONONUCLEOTIDE F - 322
1gvo_A_3191gvo   A     FMNFLAVIN MONONUCLEOTIDE G - 323
1gvo_A_3191gvo   A     FMNFLAVIN MONONUCLEOTIDE R - 324
1gvo_A_3191gvo   A     FMNFLAVIN MONONUCLEOTIDE D - 325
1gvo_A_3191gvo   A     FMNFLAVIN MONONUCLEOTIDE I - 327
1h7w_A_8121h7w   A     FMNFLAVIN MONONUCLEOTIDE Q - 814
1h7w_A_8121h7w   A     FMNFLAVIN MONONUCLEOTIDE V - 815
1h7w_A_8121h7w   A     FMNFLAVIN MONONUCLEOTIDE C - 816
1h7w_A_8121h7w   A     FMNFLAVIN MONONUCLEOTIDE S - 817
1h7w_A_8121h7w   A     FMNFLAVIN MONONUCLEOTIDE A - 818
1h7w_A_8121h7w   A     FMNFLAVIN MONONUCLEOTIDE Q - 820
1km4_A_1981km4   A     UURIDINE-5'-MONOPHOSPHATE I - 200
1km4_A_1981km4   A     UURIDINE-5'-MONOPHOSPHATE V - 201
1km4_A_1981km4   A     UURIDINE-5'-MONOPHOSPHATE G - 202
1km4_A_1981km4   A     UURIDINE-5'-MONOPHOSPHATE R - 203
1km4_A_1981km4   A     UURIDINE-5'-MONOPHOSPHATE S - 204
1km4_A_1981km4   A     UURIDINE-5'-MONOPHOSPHATE Y - 206
1q6o_A_1871q6o   A     MGMAGNESIUM ION I - 189
1q6o_A_1871q6o   A     LG6L-GULURONIC ACID 6-PHOSPHATE I - 189
1q6o_A_1871q6o   A     LG6L-GULURONIC ACID 6-PHOSPHATE A - 190
1q6o_A_1871q6o   A     LG6L-GULURONIC ACID 6-PHOSPHATE G - 191
1q6o_A_1871q6o   A     LG6L-GULURONIC ACID 6-PHOSPHATE R - 192
1q6o_A_1871q6o   A     LG6L-GULURONIC ACID 6-PHOSPHATE S - 193
1q6o_A_1871q6o   A     LG6L-GULURONIC ACID 6-PHOSPHATE R - 195
1thf_D_991thf   D     PO4PHOSPHATE ION S - 101
1thf_D_991thf   D     PO4PHOSPHATE ION I - 102
1thf_D_991thf   D     PO4PHOSPHATE ION N - 103
1thf_D_991thf   D     PO4PHOSPHATE ION T - 104
1thf_D_991thf   D     PO4PHOSPHATE ION A - 105
1thf_D_2201thf   D     PO4PHOSPHATE ION L - 222
1thf_D_2201thf   D     PO4PHOSPHATE ION A - 223
1thf_D_2201thf   D     PO4PHOSPHATE ION A - 224
1thf_D_2201thf   D     PO4PHOSPHATE ION S - 225
1thf_D_2201thf   D     PO4PHOSPHATE ION V - 226
2tps_A_2042tps   A     TPSTHIAMIN PHOSPHATE S - 206
2tps_A_2042tps   A     TPSTHIAMIN PHOSPHATE M - 207
2tps_A_2042tps   A     TPSTHIAMIN PHOSPHATE I - 208
2tps_A_2042tps   A     TPSTHIAMIN PHOSPHATE S - 209
2tps_A_2042tps   A     TPSTHIAMIN PHOSPHATE A - 210
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1ct5_A_2371ct5   A SITRESIDUES INTERACTING WITH THE CO-FACTOR PLPR - 239
1ct5_A_2371ct5   A SITRESIDUES INTERACTING WITH THE CO-FACTOR PLPT - 242
1h7w_A_8121h7w   A AC5FMN BINDING SITE FOR CHAIN AC - 816
1h7w_A_8121h7w   A AC5FMN BINDING SITE FOR CHAIN AS - 817

Clusters included in this Subclass
CLUSTER: EH.0.16