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Information on SUBCLASS 5.9.1
Subclass Accession number: 9112
Subclass: 5.9.1 PSSM
Type: HH alpha-alpha
DB: ArchDB-EC

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 9

Average sequence ID (%) : 27.8 +/- 24.1
Average RMSD (Å) : 0.456 +/- 0.167

Consensus geometry
d (Å): 9 delta (°): 90-135 theta (°): 90-135 rho (°): 225-270
Consensus Sequence: XXXXGhcXp
(φψ)-conformation: aappgbpaa
Pattern: x[aekn][aefl][AFLTV][aegkqt][aknrst][fklv][eps][GN][FIVW][DGS]x[DKRSW][aiktv][AC][degknr]
Conservation:-0.916-0.436-0.8050.001-0.733-0.569-0.5220.1812.5450.3681.371-0.541-0.351-0.5811.594-0.608
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1bpy_A_561bpy   A5671GAEAKKLPGVGTKIAEHHHHHTSSS--HHHHHaaaaaaxxgxbaaaaa
1bpy_A_921bpy   A97112INFLTRVSGIGPSAARHHHHTTSTT--HHHHHaaaaaaxpgbbaaaaa
1ezm_*_2271ezm   -233248FYLLANSPGWDTRKAFHHHHHTSTT--HHHHHaaaaaaxpvbbaaaaa
1jms_A_2441jms   A249264FKLFTSVFGVGLKTAEHHHHHTSTT--HHHHHaaaaaaxpvxxaaaaa
1kg2_A_1081kg2   A108123FEEVAALPGVGRSTAGHHHHHTSTT--HHHHHaaaaaaxpvbxaaaaa
1lwy_A_2331lwy   A237252HKALCILPGVGTKVADHHHHTTSTT--HHHHHaaaaaaxxvbxaaaaa
1mpg_A_2021mpg   A206221MKTLQTFPGIGRWTANHHHHTTSTT--HHHHHaaaaaaxxvbxaaaaa
1nn5_A_991nn5   A103118VAFTGAKENFSLDWCKHHHHHTSTT--HHHHHaaaaaaxxvbxaaaaa
2abk_*_1082abk   -108123RAALEALPGVGRKTANHHHHHHSTT--HHHHHaaaaaaxpvbbaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1kg2_A_1081kg2   A     GOLGLYCEROL F - 108
1kg2_A_1081kg2   A     GOLGLYCEROL E - 109
1kg2_A_1081kg2   A     GOLGLYCEROL R - 119
1kg2_A_1081kg2   A     GOLGLYCEROL G - 123
1lwy_A_2331lwy   A     PEDPENTANE-3,4-DIOL-5-PHOSPHATE K - 249
1lwy_A_2331lwy   A     PEDPENTANE-3,4-DIOL-5-PHOSPHATE C - 253
1nn5_A_991nn5   A     2DT3'-DEOXYTHYMIDINE-5'-MONOPHOSPHATE A - 99
1nn5_A_991nn5   A     2DT3'-DEOXYTHYMIDINE-5'-MONOPHOSPHATE S - 101
1nn5_A_991nn5   A     2DT3'-DEOXYTHYMIDINE-5'-MONOPHOSPHATE G - 102
1nn5_A_991nn5   A     2DT3'-DEOXYTHYMIDINE-5'-MONOPHOSPHATE V - 103
1nn5_A_991nn5   A     2DT3'-DEOXYTHYMIDINE-5'-MONOPHOSPHATE F - 105
1nn5_A_991nn5   A     2DT3'-DEOXYTHYMIDINE-5'-MONOPHOSPHATE T - 106
1nn5_A_991nn5   A     MGMAGNESIUM ION D - 115

Clusters included in this Subclass
CLUSTER: HH.6.25
CLUSTER: HH.7.22
CLUSTER: HH.7.41