ArchDB - Biological DataBase of Protein Loops

Information on SUBCLASS 9.12.1

Subclass Accession number: 9206
Subclass: 9.12.1

Type: HH alpha-alpha
DB: ArchDB-EC

Image coordinates:

Consensus coordinates:

Number of loops: 3

Average sequence ID (%) : 56.1 +/- -0.0
Average RMSD (Å) : 0.267 +/- 0.058

Consensus geometry

d (Å): 9

delta (°): 45-90

theta (°): 135-180

rho (°): 0-45

Consensus Sequence:	hhGVHAPGXpchp
(φψ)-conformation:	aalabpwlpbbaa

Pattern:	[P]	[W]	[CV]	[IMV]	[A]	[FI]	[LV]	[GS]	[HN]	[LMY]	[LY]	[G]	[V]	[H]	[A]	[P]	[G]	x	[KRT]	[DN]	[IL]	[QY]	[LTV]	[A]	[FI]	[DR]	[AV]	[GSV]	[H]	[HN]	[L]	[L]	x	[A]	[H]	[AG]	x	[AS]	[V]	[KRT]	x	[F]	[R]	[E]
Conservation:	1.418	3.148	-0.276	-0.505	0.120	-0.465	-0.520	-0.564	0.088	-0.841	-0.693	0.985	0.120	1.850	0.120	1.418	0.985	-1.177	-0.889	-0.050	-0.307	-0.558	-0.985	0.120	-0.564	-0.807	-0.734	-1.418	1.850	0.187	0.120	0.120	-1.289	0.120	1.850	-0.465	-0.965	-0.501	0.120	-0.889	-1.370	0.985	0.553	0.553

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1e4i_A_167	1e4i	A	167	210	PWCIAFLSNMLGVHAPGLTNLQTAIDVGHHLLVAHGLSVRRFRE	HHHHHHHHHTS--STT----HHHHHHHHHHHHHHHHHHHHHHHH	aaaaaaaaaaavabpwvxbbaaaaaaaaaaaaaaaaaaaaaaaa
1od0_A_167	1od0	A	167	210	PWVVAIVGHLYGVHAPGMRDIYVAFRAVHNLLRAHARAVKVFRE	HHHHHHHHHTS-SSTT----HHHHHHHHHHHHHHHHHHHHHHHH	aaaaaaaaaaavabpwvbbbaaaaaaaaaaaaaaaaaaaaaaaa
1qox_A_167	1qox	A	167	210	PWCMAFLSNYLGVHAPGNKDLQLAIDVSHHLLVAHGRAVTLFRE	HHHHHHHHHTS-SSTT----HHHHHHHHHHHHHHHHHHHHHHHH	aaaaaaaaaaavabpwvxbbaaaaaaaaaaaaaaaaaaaaaaaa

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1e4i_A_167	1e4i	A	NFG2,4-DINITROPHENYL 2-DEOXY-2-FLUORO-BETA-D-ALLOPYRANOSIDE	V - 199
1e4i_A_167	1e4i	A	NFG2,4-DINITROPHENYL 2-DEOXY-2-FLUORO-BETA-D-ALLOPYRANOSIDE	L - 203
1e4i_A_167	1e4i	A	NFG2,4-DINITROPHENYL 2-DEOXY-2-FLUORO-BETA-D-ALLOPYRANOSIDE	R - 207

Clusters included in this Subclass