ArchDB - Biological DataBase of Protein Loops

Information on SUBCLASS 20.1.1

Subclass Accession number: 9261
Subclass: 20.1.1

Type: HH alpha-alpha
DB: ArchDB-EC

Image coordinates:

Consensus coordinates:

Number of loops: 4

Average sequence ID (%) : 71.2 +/- 7.4
Average RMSD (Å) : 0.250 +/- 0.100

Consensus geometry

d (Å): 13

delta (°): 45-90

theta (°): 90-135

rho (°): 315-360

Consensus Sequence:	XhYPpphpXGSPFpTGIhNAhTPQ
(φψ)-conformation:	aabpapaaapbwplaeaplpabaa

Pattern:	[DE]	[A]	[ES]	[I]	[D]	[RT]	[LV]	[LM]	[AST]	[AL]	[Y]	[PT]	[GQS]	[DT]	[IL]	[ST]	x	[G]	[S]	[P]	[F]	[DR]	[T]	[G]	[I]	[FL]	[N]	[A]	[IL]	[T]	[P]	[Q]	[F]	[K]	[R]	[IV]	[AS]	[A]	[ILV]	[L]	[GS]	[D]	[LM]	[AGL]
Conservation:	-0.022	0.090	-0.890	0.090	1.250	-1.056	-0.773	-0.314	-1.139	-1.348	1.830	-0.562	-1.510	-0.885	-0.485	-0.602	-1.465	1.250	0.090	1.830	1.250	-1.173	0.670	1.250	0.090	-0.834	1.250	0.090	-0.476	0.670	1.830	0.670	1.250	0.670	0.670	-0.197	-0.773	0.090	-0.681	0.090	-0.719	1.250	-0.364	-1.955

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1gz7_A_371	1gz7	A	371	414	DAEIDTLMAAYTSDITQGSPFDTGIFNAITPQFKRISALLGDLA	HHHHHHHHHHS-S-GGGSSSTT-TTTT-SSTTHHHHHHHHHHHH	aaaaaaaaaabxaxaaaxbwxlaeaxvxabaaaaaaaaaaaaaa
1llf_A_371	1llf	A	371	414	DAEIDTLMAAYPQDITQGSPFDTGIFNAITPQFKRISAVLGDLA	HHHHHHHHHHS-S-GGGSSSTT-TTTT-SSSSHHHHHHHHHHHH	aaaaaaaaaabxapaaaxbwxvaeaxvxabaaaaaaaaaaaaaa
1lpp_*_371	1lpp	-	371	414	DAEIDTLMTAYPGDITQGSPFDTGILNALTPQFKRISAVLGDLG	HHHHHHHHHHS-S-TTSSSSTT-TTTT-SSSSHHHHHHHHHHHH	aaaaaaaaaabxapaaaxxwxvaeaxvxabaaaaaaaaaaaaaa
1thg_*_384	1thg	-	384	427	EASIDRVLSLYPQTLSVGSPFRTGILNALTPQFKRVAAILSDML	HHHHHHHHHHS-S-GGGSSSTT-TTTT-SSSSHHHHHHHHHHHH	aaaaaaaaaabxapaaaxbwxvaeaxvxabaaaaaaaaaaaaaa

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1llf_A_371	1llf	A	F23TRICOSANOIC ACID	L - 377
1llf_A_371	1llf	A	F23TRICOSANOIC ACID	I - 406
1llf_A_371	1llf	A	F23TRICOSANOIC ACID	V - 409
1llf_A_371	1llf	A	F23TRICOSANOIC ACID	L - 410
1llf_A_371	1llf	A	F23TRICOSANOIC ACID	L - 413
1llf_A_371	1llf	A	F23TRICOSANOIC ACID	A - 414
1lpp_*_371	1lpp	*	HDS1-HEXADECANOSULFONIC ACID	I - 406
1lpp_*_371	1lpp	*	HDS1-HEXADECANOSULFONIC ACID	V - 409
1lpp_*_371	1lpp	*	HDS1-HEXADECANOSULFONIC ACID	L - 410
1lpp_*_371	1lpp	*	HDS1-HEXADECANOSULFONIC ACID	L - 413
1lpp_*_371	1lpp	*	HDS1-HEXADECANOSULFONIC ACID	G - 414

Clusters included in this Subclass