| Accession | HsInv0771 | Region of the inversion | chr15:72131140-73402434 |
| Status | Obsolete | Prediction type | Simple |
| Estimated Inversion Size | 1,188,589 bp | Supporting predictions | 1 |
| Inverted allele frequency | ND | Mechanism of origin | ND |
| Functional effect | Intergenic breakpoints | Breakpoint 1 | chr15:72131140-72197406 |
| Ancestral orientation | NA | Breakpoint 2 | chr15:73303288-73402434 |
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Human Polymorphic Inversion DataBase
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General information
- Region map
+ Predictions
- Martinez-Fundichely et al. 2014 (in preparation)
| Description | Accurate prediction of inversions in the human genome from Kidd et al. 2008 fosmid paired-end mapping data using the GRIAL algorithm, and validation of some predictions by sequence analysis and PCR | ||||||||||||||||||||||||||||||||||||||||||
| Method | Paired-end mapping (PEM) | ||||||||||||||||||||||||||||||||||||||||||
| Name | |||||||||||||||||||||||
| Breakpoint 1 | chr15:72139406-72185407 | Breakpoint 2 | chr15:73304979-73352888 | ||||||||||||||||||||
| D/C Score | NA | Disc. Support Prob. | 0 | ||||||||||||||||||||
| Support | 5 probes  | ||||||||||||||||||||||
| Individuals |
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| Comments | Below the threshold of the Discordant Support (DS) probability | ||||||||||||||||||||||
+ Validation and genotyping
No validations are found
+ Frequency
No frequency studied
+ Breakpoints
| Breakpoint 1 | chr15:72131140-72197406 | Breakpoint 2 | chr15:73303288-73402434 | |||||||||||||||||||||||||||||||||||||
| Description | Breakpoints not refined due to lack of overlap of predictions in at least one breakpoint | |||||||||||||||||||||||||||||||||||||||
| Definition method | Default informatic definition | |||||||||||||||||||||||||||||||||||||||
| Mechanism of origin |
ND
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| Flexibility | 10.23 | GC content | 0.41 | Stability | 1.88 |
| Position SD1 | Size (bp) | Position SD2 | Size (bp) | Identity | Relative orientation |
| chr15:72131140-72136846 | 5,707 | chr15:73384243-73388301 | 4,059 | 0.915 | Inverted |
| chr15:72140038-72170064 | 30,027 | chr15:73354113-73384192 | 30,080 | 0.990 | Inverted |
| chr15:72167459-72174782 | 7,324 | chr15:73295367-73303288 | 7,922 | 0.930 | Inverted |
| chr15:72174835-72176350 | 1,516 | chr15:73303909-73306182 | 2,274 | 0.909 | Inverted |
| chr15:72176406-72197406 | 21,001 | chr15:73394958-73418839 | 23,882 | 0.930 | Inverted |
+ Evolutionary history
| Ancestral allele | NA | Age | ND |
| Derived allele | NA | Origin | ND |
+ Orientation in other species
Not defined
+ Age
Not defined
+ Origin
Not defined
+ Functional effects
No genes disrupted by the inversion breakpoints
+ Inversion phenotypical effects
Not defined
+ Report history
HsInv0771 incorporated information to HsInv0544
- 2015-02-23 10:14:49
| Breakpoint 1 | chr15:72139406-72185407 | Breakpoint 2 | chr15:73304979-73352888 |
| Assembly | hg18 | ||
| Definition method | Default informatic definition | ||
- 2015-02-23 10:14:49
| Breakpoint 1 | chr15:72131140-72197406 | Breakpoint 2 | chr15:73303288-73402434 |
| Assembly | hg18 | ||
| Description | Breakpoints not refined due to lack of overlap of predictions in at least one breakpoint | ||
| Definition method | Default informatic definition | ||
