| Accession | HsInv0378 | Region of the inversion | chr19:43939545-43993377 |
| Status | Obsolete | Prediction type | Simple |
| Estimated Inversion Size | 35,647 bp | Supporting predictions | 1 |
| Inverted allele frequency | ND | Mechanism of origin | ND |
| Functional effect | Intergenic breakpoints | Breakpoint 1 | chr19:43939545-43956374 |
| Ancestral orientation | NA | Breakpoint 2 | chr19:43973835-43993377 |
|
|
 |
|
|
Human Polymorphic Inversion DataBase
|
General information
- Region map
+ Predictions
- Martinez-Fundichely et al. 2014 (in preparation)
| Description | Accurate prediction of inversions in the human genome from Kidd et al. 2008 fosmid paired-end mapping data using the GRIAL algorithm, and validation of some predictions by sequence analysis and PCR | ||||||||||||||||||||||||||||||||||||||
| Method | Paired-end mapping (PEM) | ||||||||||||||||||||||||||||||||||||||
| Name | |||||||||||||||||||||||
| Breakpoint 1 | chr19:43939545-43956374 | Breakpoint 2 | chr19:43973835-43993377 | ||||||||||||||||||||
| D/C Score | 2.26 | Disc. Support Prob. | 1 | ||||||||||||||||||||
| Support | 78 probes  | ||||||||||||||||||||||
| Individuals |
| ||||||||||||||||||||||
+ Validation and genotyping
No validations are found
+ Frequency
No frequency studied
+ Breakpoints
| Breakpoint 1 | chr19:43939545-43956374 | Breakpoint 2 | chr19:43973835-43993377 | |||||||||||||
| Definition method | Default informatic definition | |||||||||||||||
| Mechanism of origin |
ND
|
|||||||||||||||
| Flexibility | 11.51 | GC content | 0.36 | Stability | 1.84 |
| Position SD1 | Size (bp) | Position SD2 | Size (bp) | Identity | Relative orientation |
| chr19:43951811-43957758 | 5,948 | chr19:43969364-43975870 | 6,507 | 0.954 | Inverted |
+ Evolutionary history
| Ancestral allele | NA | Age | ND |
| Derived allele | NA | Origin | ND |
+ Orientation in other species
Not defined
+ Age
Not defined
+ Origin
Not defined
+ Functional effects
No genes disrupted by the inversion breakpoints
+ Inversion phenotypical effects
Not defined
