Salmonella/Host Protein-Protein Interactions Browser

Salmonella Homolog protein
Known interaction
Host
Homolog protein
Shared attributes

Interaction inference method

Intersection Union
Inference of interactions based on sequence identity
Blast e-value <=
% identities >= (60-100)
Sequence coverage >= (70-100)

Expansion by PFAM interactions
iPfam
3DID

Salmonella protein restrictions

Only reported salmonella effectors and virulence factors

Group Salmonella proteins by sequence
(95% sequence identity, 90% sequence length)
Group Salmonella proteins by GeneSymbol

Only predicted transmembrane proteins (TMHMM)

Highly GUILD scored
Intersection >=
Netzcore. Top
Netscore. Top
Netshort. Top
Functional Flow. Top
PageRank. Top

Host protein restrictions

Only predicted transmembrane proteins (TMHMM)

Highly GUILD scored
Intersection >=
Netzcore. Top
Netscore. Top
Netshort. Top
Functional Flow. Top
PageRank. Top

Predicted pairs must share:
GO biological process
GO cellular component
GO molecular function

Salmonella/Host inference server

Navigation throught the results of Salmonella/Host Predictions

Shared attributes
Salmonella
protein
Predicted interaction
Host Protein


Cite: Schleker, S., Garcia-Garcia, J., Klein-Seetharaman, J. and Oliva, B. (2012), Prediction and Comparison of Salmonella-Human and Salmonella-Arabidopsis Interactomes. Chemistry & Biodiversity, 9: 991–1018. doi: 10.1002/cbdv.201100392

Contact: if you have any comments, doubts or problems in the usage of this server, please contact javier.garciag at upf.edu

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