Salmonella/Host Protein-Protein Interactions Browser

Salmonella Homolog protein	Known interaction	Host Homolog protein
Shared attributes Details	Interaction inference method Intersection Union Inference of interactions based on sequence identity Blast e-value <= % identities >= (60-100) Sequence coverage >= (70-100) Expansion by PFAM interactions iPfam 3DID Salmonella protein restrictions Only reported salmonella effectors and virulence factors Group Salmonella proteins by sequence (95% sequence identity, 90% sequence length) Group Salmonella proteins by GeneSymbol Only predicted transmembrane proteins (TMHMM) Highly GUILD scored Intersection >= Netzcore. Top Netscore. Top Netshort. Top Functional Flow. Top PageRank. Top GO term ID Description pfamID UniprotEntry UniprotAccession GeneSymbol Add as a restriction Add as a negative restriction Reset Restrictions Host protein restrictions Only predicted transmembrane proteins (TMHMM) Highly GUILD scored Intersection >= Netzcore. Top Netscore. Top Netshort. Top Functional Flow. Top PageRank. Top GO term ID Description pfamID UniprotEntry UniprotAccession GeneSymbol Add as a restriction Add as a negative restriction Reset Restrictions Predicted pairs must share: GO biological process GO cellular component GO molecular function Salmonella/Host inference server Navigation throught the results of Salmonella/Host Predictions	Shared attributes Details
Salmonella protein All subspecies S. enterica S. typhi S. typhimurium S. paratyphi B S. paratyphi A Restrict	Predicted interaction Restrict	Host Protein Human Arabidopsis Restrict

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Cite: Schleker, S., Garcia-Garcia, J., Klein-Seetharaman, J. and Oliva, B. (2012), Prediction and Comparison of Salmonella-Human and Salmonella-Arabidopsis Interactomes. Chemistry & Biodiversity, 9: 991–1018. doi: 10.1002/cbdv.201100392

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