Source Code for Package biana.BianaObjects

 1  """ 
 2      BIANA: Biologic Interactions and Network Analysis 
 3      Copyright (C) 2009  Javier Garcia-Garcia, Emre Guney, Baldo Oliva 
 4   
 5      This program is free software: you can redistribute it and/or modify 
 6      it under the terms of the GNU General Public License as published by 
 7      the Free Software Foundation, either version 3 of the License, or 
 8      (at your option) any later version. 
 9   
10      This program is distributed in the hope that it will be useful, 
11      but WITHOUT ANY WARRANTY; without even the implied warranty of 
12      MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the 
13      GNU General Public License for more details. 
14   
15      You should have received a copy of the GNU General Public License 
16      along with this program.  If not, see <http://www.gnu.org/licenses/>. 
17   
18  """ 
19   
20  # This file is required by Python to treat the directory as a containing package 
21  # It can be an empty file, but it can also execute initialization code for the package or set the __all__ variable 
22   
23  from Sequence import RNASequence,DNASequence,ProteinSequence 
24  from SequenceAlignment import SequenceAlignment 
25   
26  from ExternalEntity import ExternalEntity 
27  from ExternalEntityRelation import ExternalEntityRelation 
28   
29  from ExternalEntityAttribute import ExternalEntityAttribute 
30   
31   
32  from ExternalEntityRelationAttribute import ExternalEntityRelationAttribute 
33  from ExternalEntityRelationParticipantAttribute import ExternalEntityRelationParticipantAttribute 
34   
35  from Ontology import Ontology 
36   
37  from PDB import PDB, PDBAtom, PDBResidue, PDBFragment 
38   
39  from ExternalDatabase import ExternalDatabase 
40   
41  from UserEntity import UserEntity 
42  from UserEntityRelation import UserEntityRelation 
43  from UserEntityExpandedRelation import UserEntityExpandedRelation 
44   
45  from UnificationProtocol import UnificationProtocol, UnificationAtomElement 
46   
47   
48  import sequenceUtilities 
49   
50  from CDHIT import CDHITCluster, CDHITMatch 
51