- biana.BianaDB: BIANA: Biologic Interactions and Network Analysis Copyright (C)
2009 Javier Garcia-Garcia, Emre Guney, Baldo Oliva
- biana.BianaObjects: BIANA: Biologic Interactions and Network Analysis Copyright (C)
2009 Javier Garcia-Garcia, Emre Guney, Baldo Oliva
- biana.BianaObjects.BianaReport: BIANA: Biologic Interactions and Network Analysis Copyright (C)
2009 Javier Garcia-Garcia, Emre Guney, Baldo Oliva
- biana.BianaObjects.BianaSessionManager: BIANA: Biologic Interactions and Network Analysis Copyright (C)
2009 Javier Garcia-Garcia, Emre Guney, Baldo Oliva
- biana.BianaObjects.BlastResult
- biana.BianaObjects.CDHIT
- biana.BianaObjects.ExternalDatabase
- biana.BianaObjects.ExternalDatabase': BIANA: Biologic Interactions and Network Analysis Copyright (C)
2009 Javier Garcia-Garcia, Emre Guney, Baldo Oliva
- biana.BianaObjects.ExternalEntity
- biana.BianaObjects.ExternalEntity': BIANA: Biologic Interactions and Network Analysis Copyright (C)
2009 Javier Garcia-Garcia, Emre Guney, Baldo Oliva
- biana.BianaObjects.ExternalEntityAttribute
- biana.BianaObjects.ExternalEntityAttribute': BIANA: Biologic Interactions and Network Analysis Copyright (C)
2009 Javier Garcia-Garcia, Emre Guney, Baldo Oliva
- biana.BianaObjects.ExternalEntityRelation
- biana.BianaObjects.ExternalEntityRelation': BIANA: Biologic Interactions and Network Analysis Copyright (C)
2009 Javier Garcia-Garcia, Emre Guney, Baldo Oliva
- biana.BianaObjects.ExternalEntityRelationAttribute
- biana.BianaObjects.ExternalEntityRelationAttribute': BIANA: Biologic Interactions and Network Analysis Copyright (C)
2009 Javier Garcia-Garcia, Emre Guney, Baldo Oliva
- biana.BianaObjects.ExternalEntityRelationParticipantAttribute
- biana.BianaObjects.ExternalEntityRelationParticipantAttribute': BIANA: Biologic Interactions and Network Analysis Copyright (C)
2009 Javier Garcia-Garcia, Emre Guney, Baldo Oliva
- biana.BianaObjects.Ontology
- biana.BianaObjects.Ontology': BIANA: Biologic Interactions and Network Analysis Copyright (C)
2009 Javier Garcia-Garcia, Emre Guney, Baldo Oliva
- biana.BianaObjects.PDB
- biana.BianaObjects.PDB': BIANA: Biologic Interactions and Network Analysis Copyright (C)
2009 Javier Garcia-Garcia, Emre Guney, Baldo Oliva
- biana.BianaObjects.Sequence: BIANA: Biologic Interactions and Network Analysis Copyright (C)
2009 Javier Garcia-Garcia, Emre Guney, Baldo Oliva
- biana.BianaObjects.SequenceAlignment
- biana.BianaObjects.SequenceAlignment'
- biana.BianaObjects.UnificationProtocol
- biana.BianaObjects.UnificationProtocol': BIANA: Biologic Interactions and Network Analysis Copyright (C)
2009 Javier Garcia-Garcia, Emre Guney, Baldo Oliva
- biana.BianaObjects.UserEntity
- biana.BianaObjects.UserEntity': BIANA: Biologic Interactions and Network Analysis Copyright (C)
2009 Javier Garcia-Garcia, Emre Guney, Baldo Oliva
- biana.BianaObjects.UserEntityExpandedRelation
- biana.BianaObjects.UserEntityExpandedRelation'
- biana.BianaObjects.UserEntityRelation
- biana.BianaObjects.UserEntityRelation'
- biana.BianaObjects.UserEntitySet: BIANA: Biologic Interactions and Network Analysis Copyright (C)
2009 Javier Garcia-Garcia, Emre Guney, Baldo Oliva
- biana.BianaObjects.output_utilities
- biana.BianaObjects.sequenceUtilities: BIANA: Biologic Interactions and Network Analysis Copyright (C)
2009 Javier Garcia-Garcia, Emre Guney, Baldo Oliva
- biana.BianaParser
- biana.BianaParser.GenericParser: File : uniprot2piana.py Author : Ramon Aragues, Javier
Garcia Garcia Creation : 16.3.2004 Modified : Javier Garcia
Garcia December 2007 Contents : fills up tables in database
piana with information from uniprot Called from :
- biana.BianaParser.MyDataParser
- biana.BianaParser.XMLNode: File : uniprot2piana.py Author : Ramon Aragues, Javier
Garcia Garcia Creation : 16.3.2004 Modified : Javier Garcia
Garcia December 2007 Contents : fills up tables in database
piana with information from uniprot Called from :
- biana.BianaParser.bianaParser: BIANA: Biologic Interactions and Network Analysis Copyright (C)
2009 Javier Garcia-Garcia, Emre Guney, Baldo Oliva
- biana.BianaParser.biopaxLevel2Parser: BIANA: Biologic Interactions and Network Analysis Copyright (C)
2009 Javier Garcia-Garcia, Emre Guney, Baldo Oliva
- biana.BianaParser.cogParser: BIANA: Biologic Interactions and Network Analysis Copyright (C)
2009 Javier Garcia-Garcia, Emre Guney, Baldo Oliva
- biana.BianaParser.database2biana
- biana.BianaParser.gooboParser: BIANA: Biologic Interactions and Network Analysis Copyright (C)
2009 Javier Garcia-Garcia, Emre Guney, Baldo Oliva
- biana.BianaParser.hgncParser: BIANA: Biologic Interactions and Network Analysis Copyright (C)
2009 Javier Garcia-Garcia, Emre Guney, Baldo Oliva
- biana.BianaParser.ipiParser: BIANA: Biologic Interactions and Network Analysis Copyright (C)
2009 Javier Garcia-Garcia, Emre Guney, Baldo Oliva
- biana.BianaParser.keggGeneParser: File : keggGeneParser.py Author : Javier Garcia Garcia
Creation : January 2008 Contents : fills up tables in
database biana with information from kegg gene database Called from
:
- biana.BianaParser.keggKOParser: BIANA: Biologic Interactions and Network Analysis Copyright (C)
2009 Javier Garcia-Garcia, Emre Guney, Baldo Oliva
- biana.BianaParser.keggligandParser: File : keggligandParser.py Author : Javier Garcia
Garcia Creation : January 2008 Contents : fills up tables in
database biana with information from kegg ligand database Called
from :
- biana.BianaParser.ncbiGenPeptParser: BIANA: Biologic Interactions and Network Analysis Copyright (C)
2009 Javier Garcia-Garcia, Emre Guney, Baldo Oliva
- biana.BianaParser.nrParser: BIANA: Biologic Interactions and Network Analysis Copyright (C)
2009 Javier Garcia-Garcia, Emre Guney, Baldo Oliva
- biana.BianaParser.pfamParser: BIANA: Biologic Interactions and Network Analysis Copyright (C)
2009 Javier Garcia-Garcia, Emre Guney, Baldo Oliva
- biana.BianaParser.psi_Mi25Parser: BIANA: Biologic Interactions and Network Analysis Copyright (C)
2009 Javier Garcia-Garcia, Emre Guney, Baldo Oliva
- biana.BianaParser.psi_MiXMLParser: File : psi_MiXMLParser.py Author : Javier Garcia &
Emre Guney Creation : December 2007 Contents :
- biana.BianaParser.psimioboParser: BIANA: Biologic Interactions and Network Analysis Copyright (C)
2009 Javier Garcia-Garcia, Emre Guney, Baldo Oliva
- biana.BianaParser.scopParser: BIANA: Biologic Interactions and Network Analysis Copyright (C)
2009 Javier Garcia-Garcia, Emre Guney, Baldo Oliva
- biana.BianaParser.stringParser
- biana.BianaParser.taxonomyParser: BIANA: Biologic Interactions and Network Analysis Copyright (C)
2009 Javier Garcia-Garcia, Emre Guney, Baldo Oliva
- biana.BianaParser.uniprotParser: BIANA: Biologic Interactions and Network Analysis Copyright (C)
2009 Javier Garcia-Garcia, Emre Guney, Baldo Oliva
- biana.GraphUtilities: BIANA: Biologic Interactions and Network Analysis Copyright (C)
2009 Javier Garcia-Garcia, Emre Guney, Baldo Oliva
- biana.OutBianaInterface
- biana.OutBianaInterface': BIANA: Biologic Interactions and Network Analysis Copyright (C)
2009 Javier Garcia-Garcia, Emre Guney, Baldo Oliva
- biana.biana_commands
- biana.biana_commands': BIANA: Biologic Interactions and Network Analysis Copyright (C)
2009 Javier Garcia-Garcia, Emre Guney, Baldo Oliva
- biana.biana_globals: BIANA: Biologic Interactions and Network Analysis Copyright (C)
2009 Javier Garcia-Garcia, Emre Guney, Baldo Oliva
- biana.utilities
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