Source Code for Module biana.BianaObjects.CDHIT

 1  # CD HIT related classes 
 2   
 3 -class CDHITCluster(object): 
 4   
 5 -    def __init__(self, representant = None, matches = None): 
 6   
 7          self.representant = representant 
 8           
 9          if matches is None: 
10              self.matches = [] 
11          else: 
12              self.matches = matches 
13   
14 -    def set_representant(self, representant): 
15          self.representant = representant 
16   
17 -    def get_representant(self): 
18          return self.representant 
19   
20 -    def add_match(self, match): 
21          self.matches.append(match) 
22           
23 -    def get_matches(self): 
24          return self.matches 
25   
26   
27 -class CDHITMatch(object): 
28   
29 -    def __init__(self, sequenceID, start_pos, end_pos, repr_start_pos, repr_end_pos, identity): 
30   
31          self.sequenceID = sequenceID 
32          self.start_pos = start_pos 
33          self.end_pos = end_pos 
34          self.repr_start_pos = repr_start_pos 
35          self.repr_end_pos = repr_end_pos 
36          self.identity = identity 
37