Package biana :: Package BianaObjects :: Module PDB' :: Class PDBResidue

Class PDBResidue

Instance Methods

__init__(self, residue_num, residue_type, atoms_initial_list=[], hssp_conservation=None, hssp_entropy=None, hssp_exposure=None, hssp_norm_entropy=None, hssp_variability=None, dssp=None)
x.__init__(...) initializes x; see x.__class__.__doc__ for signature source code

add_atom(self, atomObject)

source code

get_atoms(self)

source code

get_ca_distance(self, residue2)

source code

get_cb_distance(self, residue2)

source code

get_dssp(self)

source code

get_hssp_accessibility(self)

source code

get_hssp_conservation(self)

source code

get_hssp_entropy(self)

source code

get_hssp_norm_entropy(self)

source code

get_hssp_variability(self)

source code

get_mean_distance(self, residue2)

source code

get_min_distance(self, residue2)

source code

get_num_atoms(self)

source code

get_number_atoms(self)

source code

get_residue_num(self)

source code

get_residue_type(self)

source code

Inherited from object: __delattr__, __getattribute__, __hash__, __new__, __reduce__, __reduce_ex__, __repr__, __setattr__, __str__

Properties

[hide private]

Inherited from object: __class__

Method Details

[hide private]

init(self, residue_num, residue_type, atoms_initial_list=`[]`, hssp_conservation=None, hssp_entropy=None, hssp_exposure=None, hssp_norm_entropy=None, hssp_variability=None, dssp=None)
(Constructor)

source code

x.__init__(...) initializes x; see x.__class__.__doc__ for signature

Overrides: object.__init__: (inherited documentation)

Class PDBResidue

__init__(self, residue_num, residue_type, atoms_initial_list=[], hssp_conservation=None, hssp_entropy=None, hssp_exposure=None, hssp_norm_entropy=None, hssp_variability=None, dssp=None) (Constructor)

init(self, residue_num, residue_type, atoms_initial_list=`[]`, hssp_conservation=None, hssp_entropy=None, hssp_exposure=None, hssp_norm_entropy=None, hssp_variability=None, dssp=None)
(Constructor)