biana.BianaObjects.UnificationProtocol'.UnificationAtomElement

Class UnificationAtomElement

Class to represent a condition of unification

Instance Methods

__init__(self, externalDatabaseID_A, externalDatabaseID_B, externalAttribute, field_conditions_A=[], field_conditions_B=[], field_cross_references=['value'])
"externalDatabaseID_A" and "externalDatabaseID_B" are the databaseIntegers that identify the databases we want to crossreference externalDatabaseID_A must be lower or equal to externalDatabaseID_B. source code

__str__(self)
String representation of the class

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get_externalDatabaseID_A(self)

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get_externalDatabaseID_B(self)

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get_externalDatabaseIDs(self)
returns a tuple with both database identifiers

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get_external_attribute_list(self)

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get_field_conditions_A(self)
gets a list of tuples with the following format: (field,value)

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get_field_conditions_B(self)
gets a list of tuples with the following format: (field,value)

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get_field_cross_references(self)

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is_comparable(self, unificationAtomElement2)
Checks if two atom elements are comparable, by checking the equivalence of all its attributes except the source databases

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Inherited from object: __delattr__, __getattribute__, __hash__, __new__, __reduce__, __reduce_ex__, __repr__, __setattr__

Properties

[hide private]

Inherited from object: __class__

init(self, externalDatabaseID_A, externalDatabaseID_B, externalAttribute, field_conditions_A=`[]`, field_conditions_B=`[]`, field_cross_references=`['value']`)
(Constructor)

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"externalDatabaseID_A" and "externalDatabaseID_B" are the databaseIntegers that identify the databases we want to crossreference
                                  externalDatabaseID_A must be lower or equal to externalDatabaseID_B. If not, they will be flipped

"externalAttribute" is the attribute that we want to cross-reference
                    It can be a list of attributes if they have to be taken into account together (for example, ["sequence","taxID"]

"fields_A" and "fields_B" is a list with the fields we want to cross-reference (for example, ["value","type"]

"field_conditions_A" and "field_conditions_B" is optional, and they must be a dictionary with restricted fields { "field": "restricted_value" }

"field_cross_references" is a list of the fields that have to be cross-referenced. By default, it takes the value [ "value" ]

Overrides: object.__init__

str(self)
(Informal representation operator)

source code

String representation of the class

Overrides: object.__str__

Class UnificationAtomElement

__init__(self, externalDatabaseID_A, externalDatabaseID_B, externalAttribute, field_conditions_A=[], field_conditions_B=[], field_cross_references=['value']) (Constructor)

__str__(self) (Informal representation operator)

init(self, externalDatabaseID_A, externalDatabaseID_B, externalAttribute, field_conditions_A=`[]`, field_conditions_B=`[]`, field_cross_references=`['value']`)
(Constructor)

str(self)
(Informal representation operator)