Package biana :: Package BianaParser :: Module bianaParser :: Class BianaParser

Class BianaParser

General Parser Class to biana

Instance Methods

__init__(self, default_db_description=None, default_script_name='bianaParser.py', default_script_description='This file implements a program that fills up tables in databa..., additional_compulsory_arguments=[], additional_optional_arguments=[])
Starts the bianaParser Object source code

start(self)

source code

close(self)

source code

parseArguments(self)
Method that returns a dictionary with the values of the arguments

source code

add_to_log(self, key)
Increment the counter of a log dictionary for a given key

source code

get_log_string(self)
Returns a string with the content of the log dictionary

source code

print_help(self)

source code

_indent(self, max_num_tabulators, initial_length)

source code

_splitsize(self, string, size)
Split a string in substrings with a determined size

source code

initialize_input_file_descriptor(self)
Create the input file descriptor given input database file name.

source code

parse_database(self)
Method to be overwritten by specific parsers

source code

Inherited from object: __delattr__, __getattribute__, __hash__, __new__, __reduce__, __reduce_ex__, __repr__, __setattr__, __str__

Properties

[hide private]

Inherited from object: __class__

Method Details

[hide private]

init(self, default_db_description=None, default_script_name=`'bianaParser.py'`, default_script_description=`'This file implements a program that fills up tables in databa...`, additional_compulsory_arguments=`[]`, additional_optional_arguments=`[]`)
(Constructor)

source code

Starts the bianaParser Object

Overrides: object.__init__

add_to_log(self, key)

source code

Increment the counter of a log dictionary for a given key

Used in parsers

get_log_string(self)

source code

Returns a string with the content of the log dictionary

Format: key: value

initialize_input_file_descriptor(self)

source code

Create the input file descriptor given input database file name. Handles gzipped data as well.

parse_database(self)

source code

Method to be overwritten by specific parsers

The method must include the calls to control lock and unlock database procedures

Class BianaParser

__init__(self, default_db_description=None, default_script_name='bianaParser.py', default_script_description='This file implements a program that fills up tables in databa..., additional_compulsory_arguments=[], additional_optional_arguments=[]) (Constructor)

add_to_log(self, key)

get_log_string(self)

initialize_input_file_descriptor(self)

parse_database(self)

init(self, default_db_description=None, default_script_name=`'bianaParser.py'`, default_script_description=`'This file implements a program that fills up tables in databa...`, additional_compulsory_arguments=`[]`, additional_optional_arguments=`[]`)
(Constructor)