Module psi_MiXMLParser

source code

File : psi_MiXMLParser.py Author : Javier Garcia & Emre Guney Creation : December 2007 Contents :

• Psi_MiXMLParser object to parse an XML file in PSI-MI (PSI molecular interaction format)
• Psi_MiEntry object which corresponds to the "entry" in the file (container for interactors & interactions)
• Psi_MiInteractor object
• Psi_MiInteraction object
• Psi_MiParticipant object
• Psi_MiNames object
• Psi_MiXref object
• DBReference object
• Psi_MiHandler object (Content Handler for XML parsing with SAX)

Called from : psi_MiFormattedDB2piana.py

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Generic parser aiming to read data available in PSI-MI XML format in various databases