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Wrapper around reading/processing various formatted input streams
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allowed_formats = Set(['tsv', 'fasta', 'sif'])
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Initialize an object of this class storing input_file_name: file name to be read/processed input_type: could be sif, tsv, fasta, etc..
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Read and process an input file line by line. If out_method is None a dictionary storing read lines are returned. out_method: method to output columns in current line on the fly in the input_type format fields_to_include: columns that would be included in the dictionary or processed with the function |
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