PDB: 1ava Compound: barley alpha-amylase 2(cv menuet) Classification: HYDROLASE INHIBITION Entry date in PDB: 1999-03-16 Resolution [Å]: 1.90 R-Factor: 0.208

CHAIN: A SWISS-PROT/TREMBL: P04063    KEYWORD: 3D-structure    Calcium-binding    Carbohydrate metabolism    Germination    Glycosidase    Hydrolase    Multigene family    Seed    Signal    EC: 3.2.1.1 SCOP: b.71.1.1 All beta proteins    Glycosyl hydrolase domain    Glycosyl hydrolase domain    alpha-Amylases, C-terminal beta-sheet domain    Plant alpha-amylase    Barley (Hordeum vulgare), seeds, AMY2 isozyme SCOP: c.1.8.1 Alpha and beta proteins (a/b)    TIM beta/alpha-barrel    (Trans)glycosidases    Amylase, catalytic domain    Plant alpha-amylase    Barley (Hordeum vulgare), seeds, AMY2 isozyme GO:  alpha-amylase activity    carbohydrate metabolism    CHAIN: B SWISS-PROT/TREMBL: P04063    KEYWORD: 3D-structure    Calcium-binding    Carbohydrate metabolism    Germination    Glycosidase    Hydrolase    Multigene family    Seed    Signal    EC: 3.2.1.1 SCOP: b.71.1.1 All beta proteins    Glycosyl hydrolase domain    Glycosyl hydrolase domain    alpha-Amylases, C-terminal beta-sheet domain    Plant alpha-amylase    Barley (Hordeum vulgare), seeds, AMY2 isozyme SCOP: c.1.8.1 Alpha and beta proteins (a/b)    TIM beta/alpha-barrel    (Trans)glycosidases    Amylase, catalytic domain    Plant alpha-amylase    Barley (Hordeum vulgare), seeds, AMY2 isozyme GO:  alpha-amylase activity    carbohydrate metabolism    CHAIN: C SWISS-PROT/TREMBL: P07596    KEYWORD: 3D-structure    Alpha-amylase inhibitor    Serine protease inhibitor    Signal    SCOP: b.42.4.1 All beta proteins    beta-Trefoil    STI-like    Kunitz (STI) inhibitors    Amylase/subtilisin inhibitor    Barley (Hordeum vulgare), seed GO:  endopeptidase inhibitor activity    CHAIN: D SWISS-PROT/TREMBL: P07596    KEYWORD: 3D-structure    Alpha-amylase inhibitor    Serine protease inhibitor    Signal    SCOP: b.42.4.1 All beta proteins    beta-Trefoil    STI-like    Kunitz (STI) inhibitors    Amylase/subtilisin inhibitor    Barley (Hordeum vulgare), seed GO:  endopeptidase inhibitor activity

Image Source: PDB

Loops in ArchDB95 clusters

1ava_A_175 - EH => SUBCLASS : 7.1.1
1ava_C_139 - HA => SUBCLASS : 2.2.1
1ava_A_352 - HA => SUBCLASS : 2.2.4
1ava_A_388 - HA => SUBCLASS : 2.4.3
1ava_A_361 - HA => SUBCLASS : 3.7.1
1ava_A_97 - HA => SUBCLASS : 4.3.2

Loops in ArchDB-EC clusters

1ava_A_322 - HH => SUBCLASS : 1.3.10

Loops not clustered in ArchDB

1ava_C_80 - AR
1ava_A_83 - AR
1ava_A_370 - AR
1ava_A_370 - AR
1ava_A_83 - AR
1ava_C_163 - AR
1ava_C_148 - AR
1ava_C_41 - AR
1ava_C_109 - AR
1ava_A_3 - EH
1ava_A_36 - EH
1ava_A_317 - EH
1ava_A_281 - EH
1ava_A_241 - EH
1ava_A_104 - EH
1ava_A_200 - EH
1ava_A_352 - HA
1ava_C_126 - HA
1ava_C_152 - HA
1ava_A_361 - HA
1ava_A_97 - HA
1ava_C_97 - HA
1ava_C_60 - HA
1ava_A_388 - HA
1ava_C_19 - HA
1ava_C_33 - HA
1ava_A_246 - HE
1ava_A_26 - HE
1ava_A_67 - HE
1ava_A_154 - HE
1ava_A_186 - HE
1ava_A_222 - HE
1ava_A_304 - HE
1ava_A_331 - HE
1ava_A_18 - HH

1amy - - percentage of sequence identity: 100
1ava A - percentage of sequence identity: 100
1ava B - percentage of sequence identity: 100
1bg9 - - percentage of sequence identity: 100
1ht6 A - percentage of sequence identity: 75
1p6w A - percentage of sequence identity: 75
1rp8 A - percentage of sequence identity: 75
1rp9 A - percentage of sequence identity: 75
1rpk A - percentage of sequence identity: 75