PDB: 1b06 Compound: superoxide dismutase Classification: OXIDOREDUCTASE Entry date in PDB: 1999-11-18 Resolution [Å]: 2.20 R-Factor: 0.174

CHAIN: A SWISS-PROT/TREMBL: Q08713    KEYWORD: 3D-structure    Iron    Metal-binding    Oxidoreductase    EC: 1.15.1.1 SCOP: a.2.11.1 All alpha proteins    Long alpha-hairpin    Fe,Mn superoxide dismutase (SOD), N-terminal domain    Fe,Mn superoxide dismutase (SOD), N-terminal domain    Fe superoxide dismutase (FeSOD)    Archaeon Sulfolobus acidocaldarius SCOP: d.44.1.1 Alpha and beta proteins (a+b)    Fe,Mn superoxide dismutase (SOD), C-terminal domain    Fe,Mn superoxide dismutase (SOD), C-terminal domain    Fe,Mn superoxide dismutase (SOD), C-terminal domain    Fe superoxide dismutase (FeSOD)    Archaeon Sulfolobus acidocaldarius GO:  metal ion binding    superoxide dismutase activity    superoxide metabolism    CHAIN: B SWISS-PROT/TREMBL: Q08713    KEYWORD: 3D-structure    Iron    Metal-binding    Oxidoreductase    EC: 1.15.1.1 SCOP: a.2.11.1 All alpha proteins    Long alpha-hairpin    Fe,Mn superoxide dismutase (SOD), N-terminal domain    Fe,Mn superoxide dismutase (SOD), N-terminal domain    Fe superoxide dismutase (FeSOD)    Archaeon Sulfolobus acidocaldarius SCOP: d.44.1.1 Alpha and beta proteins (a+b)    Fe,Mn superoxide dismutase (SOD), C-terminal domain    Fe,Mn superoxide dismutase (SOD), C-terminal domain    Fe,Mn superoxide dismutase (SOD), C-terminal domain    Fe superoxide dismutase (FeSOD)    Archaeon Sulfolobus acidocaldarius GO:  metal ion binding    superoxide dismutase activity    superoxide metabolism    CHAIN: C SWISS-PROT/TREMBL: Q08713    KEYWORD: 3D-structure    Iron    Metal-binding    Oxidoreductase    EC: 1.15.1.1 SCOP: a.2.11.1 All alpha proteins    Long alpha-hairpin    Fe,Mn superoxide dismutase (SOD), N-terminal domain    Fe,Mn superoxide dismutase (SOD), N-terminal domain    Fe superoxide dismutase (FeSOD)    Archaeon Sulfolobus acidocaldarius SCOP: d.44.1.1 Alpha and beta proteins (a+b)    Fe,Mn superoxide dismutase (SOD), C-terminal domain    Fe,Mn superoxide dismutase (SOD), C-terminal domain    Fe,Mn superoxide dismutase (SOD), C-terminal domain    Fe superoxide dismutase (FeSOD)    Archaeon Sulfolobus acidocaldarius GO:  metal ion binding    superoxide dismutase activity    superoxide metabolism    CHAIN: D SWISS-PROT/TREMBL: Q08713    KEYWORD: 3D-structure    Iron    Metal-binding    Oxidoreductase    EC: 1.15.1.1 SCOP: a.2.11.1 All alpha proteins    Long alpha-hairpin    Fe,Mn superoxide dismutase (SOD), N-terminal domain    Fe,Mn superoxide dismutase (SOD), N-terminal domain    Fe superoxide dismutase (FeSOD)    Archaeon Sulfolobus acidocaldarius SCOP: d.44.1.1 Alpha and beta proteins (a+b)    Fe,Mn superoxide dismutase (SOD), C-terminal domain    Fe,Mn superoxide dismutase (SOD), C-terminal domain    Fe,Mn superoxide dismutase (SOD), C-terminal domain    Fe superoxide dismutase (FeSOD)    Archaeon Sulfolobus acidocaldarius GO:  metal ion binding    superoxide dismutase activity    superoxide metabolism    CHAIN: E SWISS-PROT/TREMBL: Q08713    KEYWORD: 3D-structure    Iron    Metal-binding    Oxidoreductase    EC: 1.15.1.1 SCOP: a.2.11.1 All alpha proteins    Long alpha-hairpin    Fe,Mn superoxide dismutase (SOD), N-terminal domain    Fe,Mn superoxide dismutase (SOD), N-terminal domain    Fe superoxide dismutase (FeSOD)    Archaeon Sulfolobus acidocaldarius SCOP: d.44.1.1 Alpha and beta proteins (a+b)    Fe,Mn superoxide dismutase (SOD), C-terminal domain    Fe,Mn superoxide dismutase (SOD), C-terminal domain    Fe,Mn superoxide dismutase (SOD), C-terminal domain    Fe superoxide dismutase (FeSOD)    Archaeon Sulfolobus acidocaldarius GO:  metal ion binding    superoxide dismutase activity    superoxide metabolism    CHAIN: F SWISS-PROT/TREMBL: Q08713    KEYWORD: 3D-structure    Iron    Metal-binding    Oxidoreductase    EC: 1.15.1.1 SCOP: a.2.11.1 All alpha proteins    Long alpha-hairpin    Fe,Mn superoxide dismutase (SOD), N-terminal domain    Fe,Mn superoxide dismutase (SOD), N-terminal domain    Fe superoxide dismutase (FeSOD)    Archaeon Sulfolobus acidocaldarius SCOP: d.44.1.1 Alpha and beta proteins (a+b)    Fe,Mn superoxide dismutase (SOD), C-terminal domain    Fe,Mn superoxide dismutase (SOD), C-terminal domain    Fe,Mn superoxide dismutase (SOD), C-terminal domain    Fe superoxide dismutase (FeSOD)    Archaeon Sulfolobus acidocaldarius GO:  metal ion binding    superoxide dismutase activity    superoxide metabolism

Image Source: PDB

Loops in ArchDB40 clusters

1b06_A_134 - HA => SUBCLASS : 4.1.1
1b06_A_134 - HA => SUBCLASS : 6.1.1
1b06_A_165 - EH => SUBCLASS : 6.24.1

Loops in ArchDB95 clusters

1b06_A_165 - EH => SUBCLASS : 6.28.1
1b06_A_184 - HH => SUBCLASS : 2.1.13
1b06_A_116 - HE => SUBCLASS : 4.35.1
1b06_A_134 - HA => SUBCLASS : 4.1.1

Loops in ArchDB-EC clusters

1b06_A_184 - HH => SUBCLASS : 2.1.15

Loops not clustered in ArchDB

1b06_A_147 - AR
1b06_A_147 - AR
1b06_A_134 - HA
1b06_A_27 - HH
1b06_A_37 - HH
1b06_A_67 - HH
1b06_A_103 - HH
1b06_A_177 - HH

1b06 A - percentage of sequence identity: 100
1b06 B - percentage of sequence identity: 100
1b06 C - percentage of sequence identity: 100
1b06 D - percentage of sequence identity: 100
1b06 E - percentage of sequence identity: 100
1b06 F - percentage of sequence identity: 100
1wb7 A - percentage of sequence identity: 83
1wb7 B - percentage of sequence identity: 83
1wb8 A - percentage of sequence identity: 84
1wb8 B - percentage of sequence identity: 84