PDB: 1bja Compound: transcription regulatory protein mota Classification: ACTIVATION DOMAIN Entry date in PDB: 1998-11-04 Resolution [Å]: 2.19 R-Factor: 0.208

CHAIN: A SWISS-PROT/TREMBL: P22915    KEYWORD: 3D-structure    Activator    DNA-binding    Transcription regulation    SCOP: a.4.5.9 All alpha proteins    DNA/RNA-binding 3-helical bundle    "Winged helix" DNA-binding domain    Transcription factor MotA, activation domain    Transcription factor MotA, activation domain    Bacteriophage T4 GO:   CHAIN: B SWISS-PROT/TREMBL: P22915    KEYWORD: 3D-structure    Activator    DNA-binding    Transcription regulation    SCOP: a.4.5.9 All alpha proteins    DNA/RNA-binding 3-helical bundle    "Winged helix" DNA-binding domain    Transcription factor MotA, activation domain    Transcription factor MotA, activation domain    Bacteriophage T4 GO:

Image Source: PDB

Loops in ArchDB40 clusters

1bja_A_46 - HE => SUBCLASS : 2.4.1
1bja_A_62 - HA => SUBCLASS : 2.3.1
1bja_A_68 - EH => SUBCLASS : 1.1.3
1bja_A_68 - EH => SUBCLASS : 1.1.8
1bja_A_34 - HH => SUBCLASS : 5.2.1
1bja_A_34 - HH => SUBCLASS : 5.10.1

Loops in ArchDB95 clusters

1bja_A_68 - EH => SUBCLASS : 1.1.7
1bja_A_34 - HH => SUBCLASS : 5.2.1
1bja_A_34 - HH => SUBCLASS : 5.15.1
1bja_A_46 - HE => SUBCLASS : 2.4.1
1bja_A_46 - HE => SUBCLASS : 2.4.9
1bja_A_62 - HA => SUBCLASS : 2.3.1

Loops not clustered in ArchDB

1bja_A_4 - HH
1bja_A_17 - HH
1bja_A_73 - HH

1bja A - percentage of sequence identity: 100
1bja B - percentage of sequence identity: 100
1i1s A - percentage of sequence identity: 100