PDB: 1bvu Compound: glutamate dehydrogenase Classification: OXIDOREDUCTASE Entry date in PDB: 1999-09-18 Resolution [Å]: 2.50 R-Factor: 0.192

CHAIN: A SWISS-PROT/TREMBL: Q56304    KEYWORD: 3D-structure    NAD    NADP    Oxidoreductase    EC: 1.4.1.3 SCOP: c.2.1.7 Alpha and beta proteins (a/b)    NAD(P)-binding Rossmann-fold domains    NAD(P)-binding Rossmann-fold domains    Aminoacid dehydrogenase-like, C-terminal domain    Glutamate dehydrogenase    Archaeon Thermococcus litoralis SCOP: c.58.1.1 Alpha and beta proteins (a/b)    Aminoacid dehydrogenase-like, N-terminal domain    Aminoacid dehydrogenase-like, N-terminal domain    Aminoacid dehydrogenases    Glutamate dehydrogenase    Archaeon Thermococcus litoralis GO:  oxidoreductase activity    amino acid metabolism    CHAIN: B SWISS-PROT/TREMBL: Q56304    KEYWORD: 3D-structure    NAD    NADP    Oxidoreductase    EC: 1.4.1.3 SCOP: c.2.1.7 Alpha and beta proteins (a/b)    NAD(P)-binding Rossmann-fold domains    NAD(P)-binding Rossmann-fold domains    Aminoacid dehydrogenase-like, C-terminal domain    Glutamate dehydrogenase    Archaeon Thermococcus litoralis SCOP: c.58.1.1 Alpha and beta proteins (a/b)    Aminoacid dehydrogenase-like, N-terminal domain    Aminoacid dehydrogenase-like, N-terminal domain    Aminoacid dehydrogenases    Glutamate dehydrogenase    Archaeon Thermococcus litoralis GO:  oxidoreductase activity    amino acid metabolism    CHAIN: C SWISS-PROT/TREMBL: Q56304    KEYWORD: 3D-structure    NAD    NADP    Oxidoreductase    EC: 1.4.1.3 SCOP: c.2.1.7 Alpha and beta proteins (a/b)    NAD(P)-binding Rossmann-fold domains    NAD(P)-binding Rossmann-fold domains    Aminoacid dehydrogenase-like, C-terminal domain    Glutamate dehydrogenase    Archaeon Thermococcus litoralis SCOP: c.58.1.1 Alpha and beta proteins (a/b)    Aminoacid dehydrogenase-like, N-terminal domain    Aminoacid dehydrogenase-like, N-terminal domain    Aminoacid dehydrogenases    Glutamate dehydrogenase    Archaeon Thermococcus litoralis GO:  oxidoreductase activity    amino acid metabolism    CHAIN: D SWISS-PROT/TREMBL: Q56304    KEYWORD: 3D-structure    NAD    NADP    Oxidoreductase    EC: 1.4.1.3 SCOP: c.2.1.7 Alpha and beta proteins (a/b)    NAD(P)-binding Rossmann-fold domains    NAD(P)-binding Rossmann-fold domains    Aminoacid dehydrogenase-like, C-terminal domain    Glutamate dehydrogenase    Archaeon Thermococcus litoralis SCOP: c.58.1.1 Alpha and beta proteins (a/b)    Aminoacid dehydrogenase-like, N-terminal domain    Aminoacid dehydrogenase-like, N-terminal domain    Aminoacid dehydrogenases    Glutamate dehydrogenase    Archaeon Thermococcus litoralis GO:  oxidoreductase activity    amino acid metabolism    CHAIN: E SWISS-PROT/TREMBL: Q56304    KEYWORD: 3D-structure    NAD    NADP    Oxidoreductase    EC: 1.4.1.3 SCOP: c.2.1.7 Alpha and beta proteins (a/b)    NAD(P)-binding Rossmann-fold domains    NAD(P)-binding Rossmann-fold domains    Aminoacid dehydrogenase-like, C-terminal domain    Glutamate dehydrogenase    Archaeon Thermococcus litoralis SCOP: c.58.1.1 Alpha and beta proteins (a/b)    Aminoacid dehydrogenase-like, N-terminal domain    Aminoacid dehydrogenase-like, N-terminal domain    Aminoacid dehydrogenases    Glutamate dehydrogenase    Archaeon Thermococcus litoralis GO:  oxidoreductase activity    amino acid metabolism    CHAIN: F SWISS-PROT/TREMBL: Q56304    KEYWORD: 3D-structure    NAD    NADP    Oxidoreductase    EC: 1.4.1.3 SCOP: c.2.1.7 Alpha and beta proteins (a/b)    NAD(P)-binding Rossmann-fold domains    NAD(P)-binding Rossmann-fold domains    Aminoacid dehydrogenase-like, C-terminal domain    Glutamate dehydrogenase    Archaeon Thermococcus litoralis SCOP: c.58.1.1 Alpha and beta proteins (a/b)    Aminoacid dehydrogenase-like, N-terminal domain    Aminoacid dehydrogenase-like, N-terminal domain    Aminoacid dehydrogenases    Glutamate dehydrogenase    Archaeon Thermococcus litoralis GO:  oxidoreductase activity    amino acid metabolism

Image Source: PDB

Loops in ArchDB95 clusters

1bvu_A_71 - EH => SUBCLASS : 5.1.1
1bvu_A_101 - EH => SUBCLASS : 5.8.3
1bvu_A_312 - EH => SUBCLASS : 8.18.1
1bvu_A_365 - HH => SUBCLASS : 3.1.1
1bvu_A_4 - HH => SUBCLASS : 4.11.3
1bvu_A_345 - HH => SUBCLASS : 5.1.3
1bvu_A_149 - HH => SUBCLASS : 22.1.1
1bvu_A_323 - HE => SUBCLASS : 1.1.1
1bvu_A_221 - HE => SUBCLASS : 1.1.1
1bvu_A_221 - HE => SUBCLASS : 2.1.1
1bvu_A_221 - HE => SUBCLASS : 2.1.2
1bvu_A_79 - HE => SUBCLASS : 3.1.2
1bvu_A_24 - HE => SUBCLASS : 3.25.1
1bvu_A_189 - HE => SUBCLASS : 7.13.1
1bvu_A_256 - HE => SUBCLASS : 8.16.1

Loops in ArchDB-EC clusters

1bvu_A_345 - HH => SUBCLASS : 5.4.1

Loops not clustered in ArchDB

1bvu_A_50 - AR
1bvu_A_67 - AR
1bvu_A_50 - AR
1bvu_A_67 - AR
1bvu_A_290 - EH
1bvu_A_335 - EH
1bvu_A_276 - EH
1bvu_A_247 - EH
1bvu_A_213 - EH
1bvu_A_139 - EH
1bvu_A_35 - HA
1bvu_A_237 - HA
1bvu_A_35 - HA
1bvu_A_237 - HA
1bvu_A_302 - HE
1bvu_A_280 - HE
1bvu_A_116 - HE
1bvu_A_339 - HH

1bvu A - percentage of sequence identity: 100
1bvu B - percentage of sequence identity: 100
1bvu C - percentage of sequence identity: 100
1bvu D - percentage of sequence identity: 100
1bvu E - percentage of sequence identity: 100
1bvu F - percentage of sequence identity: 100
1euz A - percentage of sequence identity: 82
1euz B - percentage of sequence identity: 82
1euz C - percentage of sequence identity: 82
1euz D - percentage of sequence identity: 82
1euz E - percentage of sequence identity: 82
1euz F - percentage of sequence identity: 82
1gtm A - percentage of sequence identity: 87
1gtm B - percentage of sequence identity: 87
1gtm C - percentage of sequence identity: 87