PDB: 1cqd Compound: protease ii Classification: HYDROLASE Entry date in PDB: 1999-09-28 Resolution [Å]: 2.10 R-Factor: 0.213

CHAIN: A SWISS-PROT/TREMBL: P82474    KEYWORD: 3D-structure    Glycoprotein    Hydrolase    Thiol protease    EC: 3.4.22.- SCOP: d.3.1.1 Alpha and beta proteins (a+b)    Cysteine proteinases    Cysteine proteinases    Papain-like    Proline-specific cysteine protease    Ginger rhizome (Zingiber officinale) GO:  cysteine-type endopeptidase activity    cysteine-type peptidase activity    proteolysis and peptidolysis    CHAIN: B SWISS-PROT/TREMBL: P82474    KEYWORD: 3D-structure    Glycoprotein    Hydrolase    Thiol protease    EC: 3.4.22.- SCOP: d.3.1.1 Alpha and beta proteins (a+b)    Cysteine proteinases    Cysteine proteinases    Papain-like    Proline-specific cysteine protease    Ginger rhizome (Zingiber officinale) GO:  cysteine-type endopeptidase activity    cysteine-type peptidase activity    proteolysis and peptidolysis    CHAIN: C SWISS-PROT/TREMBL: P82474    KEYWORD: 3D-structure    Glycoprotein    Hydrolase    Thiol protease    EC: 3.4.22.- SCOP: d.3.1.1 Alpha and beta proteins (a+b)    Cysteine proteinases    Cysteine proteinases    Papain-like    Proline-specific cysteine protease    Ginger rhizome (Zingiber officinale) GO:  cysteine-type endopeptidase activity    cysteine-type peptidase activity    proteolysis and peptidolysis    CHAIN: D SWISS-PROT/TREMBL: P82474    KEYWORD: 3D-structure    Glycoprotein    Hydrolase    Thiol protease    EC: 3.4.22.- SCOP: d.3.1.1 Alpha and beta proteins (a+b)    Cysteine proteinases    Cysteine proteinases    Papain-like    Proline-specific cysteine protease    Ginger rhizome (Zingiber officinale) GO:  cysteine-type endopeptidase activity    cysteine-type peptidase activity    proteolysis and peptidolysis

Image Source: PDB

Loops in ArchDB95 clusters

1cqd_A_132 - EH => SUBCLASS : 4.1.4
1cqd_A_111 - EH => SUBCLASS : 5.19.1
1cqd_A_7 - EH => SUBCLASS : 16.1.1
1cqd_A_192 - AR => SUBCLASS : 15.4.1
1cqd_A_27 - HH => SUBCLASS : 7.1.1
1cqd_A_52 - HH => SUBCLASS : 11.3.1
1cqd_A_120 - HE => SUBCLASS : 2.6.2
1cqd_A_141 - HE => SUBCLASS : 4.32.1
1cqd_A_161 - HA => SUBCLASS : 2.1.3
1cqd_A_174 - HA => SUBCLASS : 11.1.1

Loops in ArchDB-EC clusters

1cqd_A_52 - HH => SUBCLASS : 11.3.1

Loops not clustered in ArchDB

1cqd_A_150 - AR
1cqd_A_150 - AR
1cqd_A_192 - AR
1cqd_A_161 - HA
1cqd_A_174 - HA
1cqd_A_70 - HE

1aec - - percentage of sequence identity: 60
1cqd A - percentage of sequence identity: 100
1cqd B - percentage of sequence identity: 100
1cqd C - percentage of sequence identity: 100
1cqd D - percentage of sequence identity: 100