PDB: 1d0q Compound: DNA primase Classification: TRANSFERASE Entry date in PDB: 2000-03-29 Resolution [Å]: 1.71 R-Factor: 0.204

CHAIN: A SWISS-PROT/TREMBL: Q9X4D0    KEYWORD: 3D-structure    DNA replication    DNA-directed RNA polymerase    Metal-binding    Primosome    Transferase    Zinc    Zinc-finger    EC: 2.7.7.- SCOP: g.41.3.2 Small proteins    Rubredoxin-like    Zinc beta-ribbon    DNA primase zinc finger    Zinc-binding domain of DNA primase    Bacillus stearothermophilus GO:  DNA binding    DNA primase activity    nucleic acid binding    DNA modification    DNA replication    DNA replication, synthesis of RNA primer    CHAIN: B SWISS-PROT/TREMBL: Q9X4D0    KEYWORD: 3D-structure    DNA replication    DNA-directed RNA polymerase    Metal-binding    Primosome    Transferase    Zinc    Zinc-finger    EC: 2.7.7.- SCOP: g.41.3.2 Small proteins    Rubredoxin-like    Zinc beta-ribbon    DNA primase zinc finger    Zinc-binding domain of DNA primase    Bacillus stearothermophilus GO:  DNA binding    DNA primase activity    nucleic acid binding    DNA modification    DNA replication    DNA replication, synthesis of RNA primer

Image Source: PDB

Loops in ArchDB40 clusters

1d0q_A_19 - HE => SUBCLASS : 2.8.1
1d0q_A_30 - HA => SUBCLASS : 2.3.1
1d0q_A_50 - HA => SUBCLASS : 4.1.1
1d0q_A_7 - HH => SUBCLASS : 2.11.1
1d0q_A_70 - HH => SUBCLASS : 3.1.1

Loops in ArchDB95 clusters

1d0q_A_7 - HH => SUBCLASS : 2.4.2
1d0q_A_70 - HH => SUBCLASS : 3.1.1
1d0q_A_30 - HA => SUBCLASS : 2.3.1
1d0q_A_50 - HA => SUBCLASS : 4.1.1

Loops in ArchDB-EC clusters

1d0q_A_70 - HH => SUBCLASS : 3.1.1

Loops not clustered in ArchDB

1d0q_A_67 - EH
1d0q_A_35 - HA
1d0q_A_58 - HA
1d0q_A_30 - HA
1d0q_A_35 - HA
1d0q_A_50 - HA
1d0q_A_58 - HA

1d0q A - percentage of sequence identity: 100
1d0q B - percentage of sequence identity: 100