PDB: 1d2o Compound: collagen adhesin Classification: STRUCTURAL PROTEIN Entry date in PDB: 2000-09-27 Resolution [Å]: 2.00 R-Factor: 0.212

CHAIN: A SWISS-PROT/TREMBL: Q53654    KEYWORD: 3D-structure    Cell wall    Peptidoglycan-anchor    Repeat    Signal    SCOP: b.3.5.1 All beta proteins    Prealbumin-like    B repeat unit of collagen binding surface protein (cna)    B repeat unit of collagen binding surface protein (cna)    B repeat unit of collagen binding surface protein (cna)    Staphylococcus aureus SCOP: b.3.5.1 All beta proteins    Prealbumin-like    B repeat unit of collagen binding surface protein (cna)    B repeat unit of collagen binding surface protein (cna)    B repeat unit of collagen binding surface protein (cna)    Staphylococcus aureus GO:  cell surface    collagen binding    CHAIN: B SWISS-PROT/TREMBL: Q53654    KEYWORD: 3D-structure    Cell wall    Peptidoglycan-anchor    Repeat    Signal    SCOP: b.3.5.1 All beta proteins    Prealbumin-like    B repeat unit of collagen binding surface protein (cna)    B repeat unit of collagen binding surface protein (cna)    B repeat unit of collagen binding surface protein (cna)    Staphylococcus aureus SCOP: b.3.5.1 All beta proteins    Prealbumin-like    B repeat unit of collagen binding surface protein (cna)    B repeat unit of collagen binding surface protein (cna)    B repeat unit of collagen binding surface protein (cna)    Staphylococcus aureus GO:  cell surface    collagen binding

Image Source: PDB

Loops in ArchDB40 clusters

1d2o_A_591 - HA => SUBCLASS : 2.1.1
1d2o_A_609 - HA => SUBCLASS : 2.1.3
1d2o_A_609 - HA => SUBCLASS : 2.1.4
1d2o_A_673 - AR => SUBCLASS : 1.1.15
1d2o_A_658 - AR => SUBCLASS : 5.47.1
1d2o_A_536 - AR => SUBCLASS : 11.1.1

Loops in ArchDB95 clusters

1d2o_A_673 - AR => SUBCLASS : 1.2.9
1d2o_A_599 - AR => SUBCLASS : 4.45.1
1d2o_A_591 - HA => SUBCLASS : 2.1.1
1d2o_A_609 - HA => SUBCLASS : 2.1.5
1d2o_A_609 - HA => SUBCLASS : 2.1.6

Loops not clustered in ArchDB

1d2o_A_626 - AR
1d2o_A_568 - AR
1d2o_A_582 - AR
1d2o_A_595 - AR
1d2o_A_617 - AR
1d2o_A_690 - AR
1d2o_A_686 - AR
1d2o_A_682 - HA
1d2o_A_649 - HA
1d2o_A_558 - HA
1d2o_A_701 - HA

1d2o A - percentage of sequence identity: 100
1d2o B - percentage of sequence identity: 100