PDB: 1d3b Compound: small nuclear ribonucleoprotein sm d3 Classification: RNA BINDING PROTEIN Entry date in PDB: 1999-12-22 Resolution [Å]: 2.00 R-Factor: 0.213

CHAIN: B SWISS-PROT/TREMBL: P14678    KEYWORD: 3D-structure    Alternative splicing    Nuclear protein    Repeat    Ribonucleoprotein    RNA-binding    Systemic lupus erythematosus    SCOP: b.38.1.1 All beta proteins    Sm-like fold    Sm-like ribonucleoproteins    Sm motif of small nuclear ribonucleoproteins, SNRNP    B core SNRNP protein    Human (Homo sapiens) GO:  nucleus    ribonucleoprotein complex    small nucleolar ribonucleoprotein complex    mRNA processing    CHAIN: D SWISS-PROT/TREMBL: P14678    KEYWORD: 3D-structure    Alternative splicing    Nuclear protein    Repeat    Ribonucleoprotein    RNA-binding    Systemic lupus erythematosus    SCOP: b.38.1.1 All beta proteins    Sm-like fold    Sm-like ribonucleoproteins    Sm motif of small nuclear ribonucleoproteins, SNRNP    B core SNRNP protein    Human (Homo sapiens) GO:  nucleus    ribonucleoprotein complex    small nucleolar ribonucleoprotein complex    mRNA processing    CHAIN: F SWISS-PROT/TREMBL: P14678    KEYWORD: 3D-structure    Alternative splicing    Nuclear protein    Repeat    Ribonucleoprotein    RNA-binding    Systemic lupus erythematosus    SCOP: b.38.1.1 All beta proteins    Sm-like fold    Sm-like ribonucleoproteins    Sm motif of small nuclear ribonucleoproteins, SNRNP    B core SNRNP protein    Human (Homo sapiens) GO:  nucleus    ribonucleoprotein complex    small nucleolar ribonucleoprotein complex    mRNA processing    CHAIN: H SWISS-PROT/TREMBL: P14678    KEYWORD: 3D-structure    Alternative splicing    Nuclear protein    Repeat    Ribonucleoprotein    RNA-binding    Systemic lupus erythematosus    SCOP: b.38.1.1 All beta proteins    Sm-like fold    Sm-like ribonucleoproteins    Sm motif of small nuclear ribonucleoproteins, SNRNP    B core SNRNP protein    Human (Homo sapiens) GO:  nucleus    ribonucleoprotein complex    small nucleolar ribonucleoprotein complex    mRNA processing    CHAIN: J SWISS-PROT/TREMBL: P14678    KEYWORD: 3D-structure    Alternative splicing    Nuclear protein    Repeat    Ribonucleoprotein    RNA-binding    Systemic lupus erythematosus    SCOP: b.38.1.1 All beta proteins    Sm-like fold    Sm-like ribonucleoproteins    Sm motif of small nuclear ribonucleoproteins, SNRNP    B core SNRNP protein    Human (Homo sapiens) GO:  nucleus    ribonucleoprotein complex    small nucleolar ribonucleoprotein complex    mRNA processing    CHAIN: L SWISS-PROT/TREMBL: P14678    KEYWORD: 3D-structure    Alternative splicing    Nuclear protein    Repeat    Ribonucleoprotein    RNA-binding    Systemic lupus erythematosus    SCOP: b.38.1.1 All beta proteins    Sm-like fold    Sm-like ribonucleoproteins    Sm motif of small nuclear ribonucleoproteins, SNRNP    B core SNRNP protein    Human (Homo sapiens) GO:  nucleus    ribonucleoprotein complex    small nucleolar ribonucleoprotein complex    mRNA processing

Image Source: PDB

Loops in ArchDB40 clusters

1d3b_A_41 - HA => SUBCLASS : 3.1.1
1d3b_B_26 - HA => SUBCLASS : 3.19.1
1d3b_B_16 - HA => SUBCLASS : 4.2.3
1d3b_A_17 - HA => SUBCLASS : 4.2.3
1d3b_A_27 - HA => SUBCLASS : 4.2.6
1d3b_A_27 - HA => SUBCLASS : 5.3.7
1d3b_B_40 - HA => SUBCLASS : 6.12.1
1d3b_A_55 - AR => SUBCLASS : 4.8.6

Loops in ArchDB95 clusters

1d3b_A_55 - AR => SUBCLASS : 4.8.3
1d3b_A_41 - HA => SUBCLASS : 3.1.1
1d3b_B_40 - HA => SUBCLASS : 4.2.1
1d3b_A_17 - HA => SUBCLASS : 4.3.3
1d3b_L_16 - HA => SUBCLASS : 4.3.3
1d3b_A_27 - HA => SUBCLASS : 4.13.1
1d3b_L_26 - HA => SUBCLASS : 5.4.2
1d3b_A_27 - HA => SUBCLASS : 5.4.2

Loops not clustered in ArchDB

1d3b_B_61 - AR
1d3b_L_61 - AR
1d3b_L_40 - HA
1d3b_A_6 - HE
1d3b_L_6 - HE

1d3b A - percentage of sequence identity: 100
1d3b C - percentage of sequence identity: 100
1d3b E - percentage of sequence identity: 100
1d3b G - percentage of sequence identity: 100
1d3b I - percentage of sequence identity: 100
1d3b K - percentage of sequence identity: 100