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Information on 1d6a
PDB: 1d6a
Compound: pokeweed antiviral protein
Classification: HYDROLASE
Entry date in PDB: 1999-12-16
Resolution [Å]: 2.10
R-Factor: 0.190


CHAIN: A
SWISS-PROT/TREMBL: P10297
   KEYWORD: 3D-structure    Antiviral    Hydrolase    Plant defense    Protein synthesis inhibitor    Signal    Toxin   
EC: 3.2.2.22
SCOP: d.165.1.1 Alpha and beta proteins (a+b)    Ribosome inactivating proteins (RIP)    Ribosome inactivating proteins (RIP)    Plant cytotoxins    Pokeweed antiviral protein alpha    Pokeweed (Phytolacca americana)
GO:  rRNA N-glycosylase activity    negative regulation of protein biosynthesis   


CHAIN: B
SWISS-PROT/TREMBL: P10297
   KEYWORD: 3D-structure    Antiviral    Hydrolase    Plant defense    Protein synthesis inhibitor    Signal    Toxin   
EC: 3.2.2.22
SCOP: d.165.1.1 Alpha and beta proteins (a+b)    Ribosome inactivating proteins (RIP)    Ribosome inactivating proteins (RIP)    Plant cytotoxins    Pokeweed antiviral protein alpha    Pokeweed (Phytolacca americana)
GO:  rRNA N-glycosylase activity    negative regulation of protein biosynthesis   
1d6a Image
Image Source: PDB

Stored Loops of 1d6a

Loops in ArchDB40 clusters

1d6a_A_33 - HA => SUBCLASS : 2.1.1
1d6a_A_73 - HA => SUBCLASS : 3.4.1
1d6a_A_61 - HA => SUBCLASS : 4.1.2
1d6a_A_222 - HA => SUBCLASS : 4.2.2
1d6a_A_49 - HA => SUBCLASS : 4.5.1
1d6a_A_222 - HA => SUBCLASS : 5.1.5
1d6a_A_3 - EH => SUBCLASS : 6.26.1
1d6a_A_160 - HH => SUBCLASS : 1.2.1

Loops in ArchDB95 clusters

1d6a_A_3 - EH => SUBCLASS : 5.61.1
1d6a_A_112 - EH => SUBCLASS : 7.33.1
1d6a_A_160 - HH => SUBCLASS : 1.2.1
1d6a_A_181 - HH => SUBCLASS : 6.38.1
1d6a_A_49 - HA => SUBCLASS : 3.2.1
1d6a_A_73 - HA => SUBCLASS : 3.5.1
1d6a_A_222 - HA => SUBCLASS : 5.1.1
1d6a_A_222 - HA => SUBCLASS : 5.1.2
1d6a_A_222 - HA => SUBCLASS : 5.1.4

Loops not clustered in ArchDB

1d6a_A_37 - AR
1d6a_A_84 - EH
1d6a_A_236 - EH
1d6a_A_13 - HE
1d6a_A_96 - HE
1d6a_A_208 - HE
1d6a_A_123 - HH
1d6a_A_142 - HH
1d6a_A_199 - HH

Homologous structures to 1d6a classified in ArchDB

1apa - - percentage of sequence identity: 74
1d6a A - percentage of sequence identity: 100
1d6a B - percentage of sequence identity: 100
1gik A - percentage of sequence identity: 76
1j1q A - percentage of sequence identity: 76
1j1r A - percentage of sequence identity: 76
1j1s A - percentage of sequence identity: 76
1paf A - percentage of sequence identity: 100
1paf B - percentage of sequence identity: 100
1pag A - percentage of sequence identity: 100
1pag B - percentage of sequence identity: 100
1qcg A - percentage of sequence identity: 100
1qcg B - percentage of sequence identity: 100
1qci A - percentage of sequence identity: 100
1qci B - percentage of sequence identity: 100
1qcj A - percentage of sequence identity: 100
1qcj B - percentage of sequence identity: 100