PDB: 1dqw Compound: orotidine 5'-phosphate decarboxylase Classification: LYASE Entry date in PDB: 2000-03-20 Resolution [Å]: 2.10 R-Factor: 0.218

CHAIN: A SWISS-PROT/TREMBL: P03962    KEYWORD: 3D-structure    Decarboxylase    Lyase    Pyrimidine biosynthesis    EC: 4.1.1.23 SCOP: c.1.2.3 Alpha and beta proteins (a/b)    TIM beta/alpha-barrel    Ribulose-phoshate binding barrel    Decarboxylase    Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase)    Baker's yeast (Saccharomyces cerevisiae) GO:  orotidine-5'-phosphate decarboxylase activity    'de novo' pyrimidine base biosynthesis    CHAIN: B SWISS-PROT/TREMBL: P03962    KEYWORD: 3D-structure    Decarboxylase    Lyase    Pyrimidine biosynthesis    EC: 4.1.1.23 SCOP: c.1.2.3 Alpha and beta proteins (a/b)    TIM beta/alpha-barrel    Ribulose-phoshate binding barrel    Decarboxylase    Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase)    Baker's yeast (Saccharomyces cerevisiae) GO:  orotidine-5'-phosphate decarboxylase activity    'de novo' pyrimidine base biosynthesis    CHAIN: C SWISS-PROT/TREMBL: P03962    KEYWORD: 3D-structure    Decarboxylase    Lyase    Pyrimidine biosynthesis    EC: 4.1.1.23 SCOP: c.1.2.3 Alpha and beta proteins (a/b)    TIM beta/alpha-barrel    Ribulose-phoshate binding barrel    Decarboxylase    Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase)    Baker's yeast (Saccharomyces cerevisiae) GO:  orotidine-5'-phosphate decarboxylase activity    'de novo' pyrimidine base biosynthesis    CHAIN: D SWISS-PROT/TREMBL: P03962    KEYWORD: 3D-structure    Decarboxylase    Lyase    Pyrimidine biosynthesis    EC: 4.1.1.23 SCOP: c.1.2.3 Alpha and beta proteins (a/b)    TIM beta/alpha-barrel    Ribulose-phoshate binding barrel    Decarboxylase    Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase)    Baker's yeast (Saccharomyces cerevisiae) GO:  orotidine-5'-phosphate decarboxylase activity    'de novo' pyrimidine base biosynthesis

Image Source: PDB

Loops in ArchDB40 clusters

1dqw_A_32 - EH => SUBCLASS : 4.18.3
1dqw_A_32 - EH => SUBCLASS : 5.18.1
1dqw_A_6 - HH => SUBCLASS : 3.4.2
1dqw_A_6 - HH => SUBCLASS : 3.4.6

Loops in ArchDB95 clusters

1dqw_A_32 - EH => SUBCLASS : 4.3.1
1dqw_A_32 - EH => SUBCLASS : 4.3.2
1dqw_A_32 - EH => SUBCLASS : 5.14.2
1dqw_A_6 - HH => SUBCLASS : 3.3.2

Loops in ArchDB-EC clusters

1dqw_A_6 - HH => SUBCLASS : 3.4.1

Loops not clustered in ArchDB

1dqw_A_57 - EH
1dqw_A_87 - EH
1dqw_A_118 - EH
1dqw_A_146 - EH
1dqw_A_198 - EH
1dqw_A_230 - EH
1dqw_A_179 - HA
1dqw_A_179 - HA
1dqw_A_41 - HE
1dqw_A_112 - HE
1dqw_A_128 - HE
1dqw_A_162 - HE
1dqw_A_220 - HE
1dqw_A_16 - HE
1dqw_A_74 - HE
1dqw_A_98 - HH

1dqw A - percentage of sequence identity: 100
1dqw B - percentage of sequence identity: 100
1dqw C - percentage of sequence identity: 100
1dqw D - percentage of sequence identity: 100
1dqx A - percentage of sequence identity: 100
1dqx B - percentage of sequence identity: 100
1dqx C - percentage of sequence identity: 100
1dqx D - percentage of sequence identity: 100