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Information on 1ekm
PDB: 1ekm
Compound: copper amine oxidase
Classification: OXIDOREDUCTASE
Entry date in PDB: 2000-08-23
Resolution [Å]: 2.50
R-Factor: 0.183


CHAIN: A
SWISS-PROT/TREMBL: P12807
   KEYWORD: 3D-structure    Copper    Glycoprotein    Metal-binding    Oxidoreductase    Peroxisome    TPQ   
EC: 1.4.3.6
SCOP: b.30.2.1 All beta proteins    Supersandwich    Amine oxidase catalytic domain    Amine oxidase catalytic domain    Copper amine oxidase, domain 3    Yeast (Hansenula polymorpha)
SCOP: d.17.2.1 Alpha and beta proteins (a+b)    Cystatin-like    Amine oxidase N-terminal region    Amine oxidase N-terminal region    Copper amine oxidase, domains 1 and 2    Yeast (Hansenula polymorpha)
SCOP: d.17.2.1 Alpha and beta proteins (a+b)    Cystatin-like    Amine oxidase N-terminal region    Amine oxidase N-terminal region    Copper amine oxidase, domains 1 and 2    Yeast (Hansenula polymorpha)
GO:  copper ion binding   


CHAIN: B
SWISS-PROT/TREMBL: P12807
   KEYWORD: 3D-structure    Copper    Glycoprotein    Metal-binding    Oxidoreductase    Peroxisome    TPQ   
EC: 1.4.3.6
SCOP: b.30.2.1 All beta proteins    Supersandwich    Amine oxidase catalytic domain    Amine oxidase catalytic domain    Copper amine oxidase, domain 3    Yeast (Hansenula polymorpha)
SCOP: d.17.2.1 Alpha and beta proteins (a+b)    Cystatin-like    Amine oxidase N-terminal region    Amine oxidase N-terminal region    Copper amine oxidase, domains 1 and 2    Yeast (Hansenula polymorpha)
SCOP: d.17.2.1 Alpha and beta proteins (a+b)    Cystatin-like    Amine oxidase N-terminal region    Amine oxidase N-terminal region    Copper amine oxidase, domains 1 and 2    Yeast (Hansenula polymorpha)
GO:  copper ion binding   


CHAIN: C
SWISS-PROT/TREMBL: P12807
   KEYWORD: 3D-structure    Copper    Glycoprotein    Metal-binding    Oxidoreductase    Peroxisome    TPQ   
EC: 1.4.3.6
SCOP: b.30.2.1 All beta proteins    Supersandwich    Amine oxidase catalytic domain    Amine oxidase catalytic domain    Copper amine oxidase, domain 3    Yeast (Hansenula polymorpha)
SCOP: d.17.2.1 Alpha and beta proteins (a+b)    Cystatin-like    Amine oxidase N-terminal region    Amine oxidase N-terminal region    Copper amine oxidase, domains 1 and 2    Yeast (Hansenula polymorpha)
SCOP: d.17.2.1 Alpha and beta proteins (a+b)    Cystatin-like    Amine oxidase N-terminal region    Amine oxidase N-terminal region    Copper amine oxidase, domains 1 and 2    Yeast (Hansenula polymorpha)
GO:  copper ion binding   
1ekm Image
Image Source: PDB

Stored Loops of 1ekm

Loops in ArchDB40 clusters

1ekm_A_275 - HA => SUBCLASS : 2.1.1
1ekm_A_258 - HA => SUBCLASS : 2.1.3
1ekm_A_253 - HA => SUBCLASS : 2.3.1
1ekm_A_444 - HA => SUBCLASS : 2.5.1
1ekm_A_405 - HA => SUBCLASS : 3.1.1
1ekm_A_264 - HA => SUBCLASS : 3.2.1
1ekm_A_91 - HA => SUBCLASS : 4.1.2
1ekm_A_193 - HA => SUBCLASS : 4.1.2
1ekm_A_405 - HA => SUBCLASS : 4.2.1
1ekm_A_661 - EH => SUBCLASS : 1.1.9
1ekm_A_49 - EH => SUBCLASS : 3.3.3
1ekm_A_49 - EH => SUBCLASS : 3.3.5
1ekm_A_498 - EH => SUBCLASS : 4.12.3
1ekm_A_124 - HH => SUBCLASS : 1.1.1
1ekm_A_124 - HH => SUBCLASS : 1.1.2
1ekm_A_118 - HH => SUBCLASS : 2.13.1

Loops in ArchDB95 clusters

1ekm_A_316 - EH => SUBCLASS : 1.1.2
1ekm_A_661 - EH => SUBCLASS : 1.1.13
1ekm_A_661 - EH => SUBCLASS : 1.1.14
1ekm_A_49 - EH => SUBCLASS : 3.1.4
1ekm_A_49 - EH => SUBCLASS : 3.1.11
1ekm_A_498 - EH => SUBCLASS : 4.5.1
1ekm_A_124 - HH => SUBCLASS : 1.1.2
1ekm_A_118 - HH => SUBCLASS : 2.9.2
1ekm_A_258 - HA => SUBCLASS : 2.1.1
1ekm_A_275 - HA => SUBCLASS : 2.1.3
1ekm_A_258 - HA => SUBCLASS : 2.1.5
1ekm_A_275 - HA => SUBCLASS : 2.1.9
1ekm_A_253 - HA => SUBCLASS : 2.3.1
1ekm_A_444 - HA => SUBCLASS : 2.4.2
1ekm_A_405 - HA => SUBCLASS : 3.1.2
1ekm_A_264 - HA => SUBCLASS : 3.3.1
1ekm_A_91 - HA => SUBCLASS : 4.1.2
1ekm_A_193 - HA => SUBCLASS : 4.1.2

Loops not clustered in ArchDB

1ekm_A_614 - AR
1ekm_A_432 - AR
1ekm_A_419 - AR
1ekm_A_456 - AR
1ekm_A_634 - AR
1ekm_A_451 - AR
1ekm_A_102 - EH
1ekm_A_202 - EH
1ekm_A_540 - EH
1ekm_A_570 - EH
1ekm_A_78 - HA
1ekm_A_522 - HA
1ekm_A_474 - HA
1ekm_A_151 - HA
1ekm_A_170 - HA
1ekm_A_288 - HA
1ekm_A_343 - HA
1ekm_A_356 - HA
1ekm_A_385 - HA
1ekm_A_558 - HE
1ekm_A_508 - HE
1ekm_A_319 - HE
1ekm_A_225 - HE
1ekm_A_132 - HE
1ekm_A_61 - HE
1ekm_A_30 - HE
1ekm_A_597 - HE

Homologous structures to 1ekm classified in ArchDB

1a2v A - percentage of sequence identity: 100
1a2v B - percentage of sequence identity: 100
1a2v C - percentage of sequence identity: 100
1a2v D - percentage of sequence identity: 100
1a2v E - percentage of sequence identity: 100
1a2v F - percentage of sequence identity: 100
1ekm A - percentage of sequence identity: 100
1ekm B - percentage of sequence identity: 100
1ekm C - percentage of sequence identity: 100