PDB: 1f0l Compound: diphtheria toxin Classification: TOXIN Entry date in PDB: 2000-11-16 Resolution [Å]: 1.55 R-Factor: 0.188

CHAIN: A SWISS-PROT/TREMBL: P00588    KEYWORD: 3D-structure    Glycosyltransferase    NAD    Signal    Toxin    Transferase    EC: 2.4.2.36 SCOP: b.2.1.1 All beta proteins    Common fold of diphtheria toxin/transcription factors/cytochrome f    Diphtheria toxin, C-terminal domain    Diphtheria toxin, C-terminal domain    Diphtheria toxin, C-terminal domain    Corynebacterium diphtheriae SCOP: d.166.1.1 Alpha and beta proteins (a+b)    ADP-ribosylation    ADP-ribosylation    ADP-ribosylating toxins    Diphtheria toxin, N-terminal domain    Corynebacterium diphtheriae SCOP: f.1.2.1 Membrane and cell surface proteins and peptides    Toxins' membrane translocation domains    Diphtheria toxin, middle domain    Diphtheria toxin, middle domain    Diphtheria toxin, middle domain    Corynebacterium diphtheriae GO:  extracellular region    NAD+-diphthamide ADP-ribosyltransferase activity    pathogenesis    CHAIN: B SWISS-PROT/TREMBL: P00588    KEYWORD: 3D-structure    Glycosyltransferase    NAD    Signal    Toxin    Transferase    EC: 2.4.2.36 SCOP: b.2.1.1 All beta proteins    Common fold of diphtheria toxin/transcription factors/cytochrome f    Diphtheria toxin, C-terminal domain    Diphtheria toxin, C-terminal domain    Diphtheria toxin, C-terminal domain    Corynebacterium diphtheriae SCOP: d.166.1.1 Alpha and beta proteins (a+b)    ADP-ribosylation    ADP-ribosylation    ADP-ribosylating toxins    Diphtheria toxin, N-terminal domain    Corynebacterium diphtheriae SCOP: f.1.2.1 Membrane and cell surface proteins and peptides    Toxins' membrane translocation domains    Diphtheria toxin, middle domain    Diphtheria toxin, middle domain    Diphtheria toxin, middle domain    Corynebacterium diphtheriae GO:  extracellular region    NAD+-diphthamide ADP-ribosyltransferase activity    pathogenesis

Image Source: PDB

Loops in ArchDB40 clusters

1f0l_A_310 - HE => SUBCLASS : 1.1.3
1f0l_A_310 - HE => SUBCLASS : 1.1.8
1f0l_A_316 - HA => SUBCLASS : 2.1.1
1f0l_A_459 - HA => SUBCLASS : 2.1.1
1f0l_A_133 - HA => SUBCLASS : 8.9.1
1f0l_A_53 - EH => SUBCLASS : 2.1.1
1f0l_A_88 - EH => SUBCLASS : 4.31.2
1f0l_A_12 - AR => SUBCLASS : 1.2.1
1f0l_A_441 - AR => SUBCLASS : 3.4.2
1f0l_A_394 - AR => SUBCLASS : 4.24.1
1f0l_A_441 - AR => SUBCLASS : 5.2.1
1f0l_A_114 - HH => SUBCLASS : 1.1.1
1f0l_A_206 - HH => SUBCLASS : 1.1.1
1f0l_A_291 - HH => SUBCLASS : 1.1.2
1f0l_A_114 - HH => SUBCLASS : 1.1.3

Loops in ArchDB95 clusters

1f0l_A_53 - EH => SUBCLASS : 2.1.1
1f0l_A_88 - EH => SUBCLASS : 4.18.2
1f0l_A_88 - EH => SUBCLASS : 4.30.3
1f0l_A_12 - AR => SUBCLASS : 1.1.3
1f0l_A_441 - AR => SUBCLASS : 3.2.1
1f0l_A_441 - AR => SUBCLASS : 3.2.3
1f0l_A_413 - AR => SUBCLASS : 6.42.1
1f0l_A_291 - HH => SUBCLASS : 1.1.1
1f0l_A_206 - HH => SUBCLASS : 1.1.1
1f0l_A_114 - HH => SUBCLASS : 1.1.2
1f0l_A_206 - HH => SUBCLASS : 1.1.2
1f0l_A_291 - HH => SUBCLASS : 1.1.5
1f0l_A_114 - HH => SUBCLASS : 1.1.5
1f0l_A_310 - HE => SUBCLASS : 1.2.1
1f0l_A_310 - HE => SUBCLASS : 1.2.5
1f0l_A_459 - HA => SUBCLASS : 2.1.1
1f0l_A_316 - HA => SUBCLASS : 2.1.1
1f0l_A_459 - HA => SUBCLASS : 3.2.1
1f0l_A_133 - HA => SUBCLASS : 8.20.1

Loops in ArchDB-EC clusters

1f0l_A_206 - HH => SUBCLASS : 1.1.6

Loops not clustered in ArchDB

1f0l_A_521 - AR
1f0l_A_455 - AR
1f0l_A_468 - AR
1f0l_A_477 - AR
1f0l_A_485 - AR
1f0l_A_521 - AR
1f0l_A_12 - AR
1f0l_A_79 - AR
1f0l_A_147 - AR
1f0l_A_394 - AR
1f0l_A_405 - AR
1f0l_A_413 - AR
1f0l_A_427 - AR
1f0l_A_431 - AR
1f0l_A_441 - AR
1f0l_A_468 - AR
1f0l_A_477 - AR
1f0l_A_485 - AR
1f0l_A_431 - AR
1f0l_A_427 - AR
1f0l_A_405 - AR
1f0l_A_455 - AR
1f0l_A_147 - AR
1f0l_A_79 - AR
1f0l_A_320 - EH
1f0l_A_160 - EH
1f0l_A_508 - HA
1f0l_A_508 - HA
1f0l_A_449 - HA
1f0l_A_459 - HA
1f0l_A_449 - HA
1f0l_A_389 - HA
1f0l_A_389 - HA
1f0l_A_18 - HA
1f0l_A_316 - HA
1f0l_A_133 - HA
1f0l_A_18 - HA
1f0l_A_2 - HE
1f0l_A_359 - HE
1f0l_A_121 - HE
1f0l_A_59 - HE
1f0l_A_326 - HH
1f0l_A_297 - HH
1f0l_A_99 - HH
1f0l_A_275 - HH
1f0l_A_261 - HH
1f0l_A_224 - HH
1f0l_A_240 - HH
1f0l_A_176 - HH

1ddt - - percentage of sequence identity: 100
1dtp - - percentage of sequence identity: 100
1f0l A - percentage of sequence identity: 100
1f0l B - percentage of sequence identity: 100
1mdt A - percentage of sequence identity: 100
1mdt B - percentage of sequence identity: 100
1sgk - - percentage of sequence identity: 100
1tox A - percentage of sequence identity: 100
1tox B - percentage of sequence identity: 100
1xdt T - percentage of sequence identity: 100