PDB: 1f7d Compound: pol polyprotein Classification: VIRUS/VIRAL PROTEIN Entry date in PDB: 2000-09-06 Resolution [Å]: 1.40 R-Factor: 0.186

CHAIN: A SWISS-PROT/TREMBL: P16088    KEYWORD: 3D-structure    Aspartyl protease    Endonuclease    Hydrolase    Metal-binding    Nuclease    Nucleotide metabolism    Polyprotein    RNA-directed DNA polymerase    Transferase    Zinc    Zinc-finger    EC: 2.7.7.49 SCOP: b.85.4.1 All beta proteins    beta-clip    dUTPase-like    dUTPase-like    Deoxyuridine 5'-triphosphate nucleotidohydrolase (dUTPase)    Feline immunodeficiency virus GO:  aspartic-type endopeptidase activity    DNA binding    integrase activity    nucleic acid binding    ribonuclease H activity    RNA binding    RNA-directed DNA polymerase activity    zinc ion binding    DNA integration    DNA recombination    dUTP metabolism    proteolysis and peptidolysis    RNA-dependent DNA replication    CHAIN: B SWISS-PROT/TREMBL: P16088    KEYWORD: 3D-structure    Aspartyl protease    Endonuclease    Hydrolase    Metal-binding    Nuclease    Nucleotide metabolism    Polyprotein    RNA-directed DNA polymerase    Transferase    Zinc    Zinc-finger    EC: 2.7.7.49 SCOP: b.85.4.1 All beta proteins    beta-clip    dUTPase-like    dUTPase-like    Deoxyuridine 5'-triphosphate nucleotidohydrolase (dUTPase)    Feline immunodeficiency virus GO:  aspartic-type endopeptidase activity    DNA binding    integrase activity    nucleic acid binding    ribonuclease H activity    RNA binding    RNA-directed DNA polymerase activity    zinc ion binding    DNA integration    DNA recombination    dUTP metabolism    proteolysis and peptidolysis    RNA-dependent DNA replication

Image Source: PDB

Loops in ArchDB40 clusters

1f7d_A_48 - EH => SUBCLASS : 2.2.1
1f7d_A_18 - AR => SUBCLASS : 2.1.1
1f7d_A_18 - AR => SUBCLASS : 2.1.2
1f7d_A_33 - AR => SUBCLASS : 2.9.1
1f7d_A_63 - AR => SUBCLASS : 2.10.1
1f7d_A_26 - AR => SUBCLASS : 3.3.2
1f7d_A_79 - AR => SUBCLASS : 3.8.1
1f7d_A_90 - AR => SUBCLASS : 4.4.2
1f7d_A_26 - AR => SUBCLASS : 4.4.3
1f7d_A_18 - AR => SUBCLASS : 4.5.1
1f7d_A_41 - AR => SUBCLASS : 4.27.1
1f7d_A_69 - AR => SUBCLASS : 8.13.1

Loops in ArchDB95 clusters

1f7d_A_48 - EH => SUBCLASS : 2.2.1
1f7d_A_26 - AR => SUBCLASS : 1.1.2
1f7d_A_18 - AR => SUBCLASS : 1.2.8
1f7d_A_33 - AR => SUBCLASS : 2.11.1
1f7d_A_63 - AR => SUBCLASS : 2.13.1
1f7d_A_18 - AR => SUBCLASS : 3.7.1
1f7d_A_90 - AR => SUBCLASS : 4.2.2
1f7d_A_18 - AR => SUBCLASS : 4.3.2
1f7d_A_41 - AR => SUBCLASS : 4.17.1
1f7d_A_79 - AR => SUBCLASS : 5.1.1
1f7d_A_41 - AR => SUBCLASS : 6.17.1
1f7d_A_69 - AR => SUBCLASS : 7.40.1
1f7d_A_3 - AR => SUBCLASS : 12.14.1

Loops in ArchDB-EC clusters

1f7d_A_56 - HE => SUBCLASS : 1.1.6

Loops not clustered in ArchDB

1f7d_A_3 - AR
1f7d_A_18 - AR
1f7d_A_26 - AR
1f7d_A_33 - AR
1f7d_A_41 - AR
1f7d_A_63 - AR
1f7d_A_69 - AR
1f7d_A_79 - AR
1f7d_A_90 - AR

1dut A - percentage of sequence identity: 100
1dut B - percentage of sequence identity: 100
1f7d A - percentage of sequence identity: 100
1f7d B - percentage of sequence identity: 100
1f7k A - percentage of sequence identity: 100
1f7k B - percentage of sequence identity: 100
1f7n A - percentage of sequence identity: 100
1f7n B - percentage of sequence identity: 100
1f7o A - percentage of sequence identity: 100
1f7o B - percentage of sequence identity: 100
1f7o C - percentage of sequence identity: 100
1f7p A - percentage of sequence identity: 100
1f7p B - percentage of sequence identity: 100
1f7p C - percentage of sequence identity: 100
1f7q A - percentage of sequence identity: 100
1f7q B - percentage of sequence identity: 100
1f7q C - percentage of sequence identity: 100
1f7r A - percentage of sequence identity: 100