PDB: 1f9f Compound: regulatory protein e2 Classification: TRANSCRIPTION Entry date in PDB: 2000-11-15 Resolution [Å]: 1.90 R-Factor: 0.237

CHAIN: A SWISS-PROT/TREMBL: P06790    KEYWORD: 3D-structure    Activator    DNA replication    DNA-binding    Early protein    Nuclear protein    Repressor    Trans-acting factor    Transcription regulation    3D-structure    Activator    DNA replication    DNA-binding    Early protein    Nuclear protein    Repressor    Trans-acting factor    Transcription regulation    SCOP: d.58.8.1 Alpha and beta proteins (a+b)    Ferredoxin-like    Viral DNA-binding domain    Viral DNA-binding domain    Papillomavirus-1 E2 protein    Human papillomavirus type 18 GO:  host cell nucleus    DNA binding    nucleotide binding    transcription factor activity    regulation of DNA replication    regulation of transcription, DNA-dependent    CHAIN: B SWISS-PROT/TREMBL: P06790    KEYWORD: 3D-structure    Activator    DNA replication    DNA-binding    Early protein    Nuclear protein    Repressor    Trans-acting factor    Transcription regulation    3D-structure    Activator    DNA replication    DNA-binding    Early protein    Nuclear protein    Repressor    Trans-acting factor    Transcription regulation    SCOP: d.58.8.1 Alpha and beta proteins (a+b)    Ferredoxin-like    Viral DNA-binding domain    Viral DNA-binding domain    Papillomavirus-1 E2 protein    Human papillomavirus type 18 GO:  host cell nucleus    DNA binding    nucleotide binding    transcription factor activity    regulation of DNA replication    regulation of transcription, DNA-dependent    CHAIN: C SWISS-PROT/TREMBL: P06790    KEYWORD: 3D-structure    Activator    DNA replication    DNA-binding    Early protein    Nuclear protein    Repressor    Trans-acting factor    Transcription regulation    3D-structure    Activator    DNA replication    DNA-binding    Early protein    Nuclear protein    Repressor    Trans-acting factor    Transcription regulation    SCOP: d.58.8.1 Alpha and beta proteins (a+b)    Ferredoxin-like    Viral DNA-binding domain    Viral DNA-binding domain    Papillomavirus-1 E2 protein    Human papillomavirus type 18 GO:  host cell nucleus    DNA binding    nucleotide binding    transcription factor activity    regulation of DNA replication    regulation of transcription, DNA-dependent

Image Source: PDB

Loops in ArchDB95 clusters

1f9f_A_330 - EH => SUBCLASS : 2.1.6
1f9f_A_340 - HE => SUBCLASS : 6.25.1

Loops not clustered in ArchDB

1f9f_A_315 - AR
1f9f_A_286 - EH
1f9f_A_296 - HE

1a7g E - percentage of sequence identity: 60
1dhm A - percentage of sequence identity: 60
1dhm B - percentage of sequence identity: 60
1f9f A - percentage of sequence identity: 100
1f9f B - percentage of sequence identity: 100
1f9f C - percentage of sequence identity: 100
1f9f D - percentage of sequence identity: 100
1jj4 A - percentage of sequence identity: 100
1jj4 B - percentage of sequence identity: 100