PDB: 1gg4 Compound: udp-n-acetylmuramoylalanyl-d-glutamyl-2,6- diamino Classification: LIGASE Entry date in PDB: 2000-12-20 Resolution [Å]: 2.30 R-Factor: 0.203

CHAIN: A SWISS-PROT/TREMBL: P11880    KEYWORD: 3D-structure    ATP-binding    Cell division    Cell wall    Complete proteome    Ligase    Peptidoglycan synthesis    EC: 6.3.2.10 SCOP: c.98.1.1 Alpha and beta proteins (a/b)    MurF and HprK N-domain-like    MurE/MurF N-terminal domain    MurE/MurF N-terminal domain    UDP-murNac-tripeptide D-alanyl-D-alanine-adding enzyme MurF    Escherichia coli SCOP: c.59.1.1 Alpha and beta proteins (a/b)    MurD-like peptide ligases, peptide-binding domain    MurD-like peptide ligases, peptide-binding domain    MurCDEF C-terminal domain    UDP-murNac-tripeptide D-alanyl-D-alanine-adding enzyme MurF    Escherichia coli SCOP: c.72.2.1 Alpha and beta proteins (a/b)    Ribokinase-like    MurD-like peptide ligases, catalytic domain    MurCDEF    UDP-murNac-tripeptide D-alanyl-D-alanine-adding enzyme MurF    Escherichia coli GO:  cytoplasm    ATP binding    ligase activity    UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate-D-alanyl-D-alanine ligase activity    biosynthesis    CHAIN: B SWISS-PROT/TREMBL: P11880    KEYWORD: 3D-structure    ATP-binding    Cell division    Cell wall    Complete proteome    Ligase    Peptidoglycan synthesis    EC: 6.3.2.10 SCOP: c.98.1.1 Alpha and beta proteins (a/b)    MurF and HprK N-domain-like    MurE/MurF N-terminal domain    MurE/MurF N-terminal domain    UDP-murNac-tripeptide D-alanyl-D-alanine-adding enzyme MurF    Escherichia coli SCOP: c.59.1.1 Alpha and beta proteins (a/b)    MurD-like peptide ligases, peptide-binding domain    MurD-like peptide ligases, peptide-binding domain    MurCDEF C-terminal domain    UDP-murNac-tripeptide D-alanyl-D-alanine-adding enzyme MurF    Escherichia coli SCOP: c.72.2.1 Alpha and beta proteins (a/b)    Ribokinase-like    MurD-like peptide ligases, catalytic domain    MurCDEF    UDP-murNac-tripeptide D-alanyl-D-alanine-adding enzyme MurF    Escherichia coli GO:  cytoplasm    ATP binding    ligase activity    UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate-D-alanyl-D-alanine ligase activity    biosynthesis

Image Source: PDB

Loops in ArchDB40 clusters

1gg4_A_249 - HA => SUBCLASS : 2.2.1
1gg4_A_260 - HA => SUBCLASS : 2.2.2
1gg4_A_318 - HA => SUBCLASS : 2.5.1
1gg4_A_318 - HA => SUBCLASS : 2.6.1
1gg4_A_77 - EH => SUBCLASS : 0.1.1
1gg4_A_386 - EH => SUBCLASS : 1.2.19
1gg4_A_405 - EH => SUBCLASS : 2.1.1
1gg4_A_269 - EH => SUBCLASS : 4.45.1

Loops in ArchDB95 clusters

1gg4_A_405 - EH => SUBCLASS : 2.1.1
1gg4_A_77 - EH => SUBCLASS : 2.1.4
1gg4_A_269 - EH => SUBCLASS : 4.57.1
1gg4_A_6 - HE => SUBCLASS : 1.2.5
1gg4_A_6 - HE => SUBCLASS : 2.1.1
1gg4_A_410 - HE => SUBCLASS : 2.2.1
1gg4_A_83 - HE => SUBCLASS : 2.2.6
1gg4_A_410 - HE => SUBCLASS : 2.3.1
1gg4_A_367 - HE => SUBCLASS : 3.1.1
1gg4_A_54 - HE => SUBCLASS : 3.1.1
1gg4_A_166 - HE => SUBCLASS : 3.1.1
1gg4_A_166 - HE => SUBCLASS : 3.3.2
1gg4_A_224 - HE => SUBCLASS : 3.24.1
1gg4_A_395 - HE => SUBCLASS : 3.36.1
1gg4_A_249 - HA => SUBCLASS : 2.2.1
1gg4_A_318 - HA => SUBCLASS : 2.4.1
1gg4_A_318 - HA => SUBCLASS : 2.4.2
1gg4_A_249 - HA => SUBCLASS : 3.1.1

Loops in ArchDB-EC clusters

1gg4_A_395 - HE => SUBCLASS : 3.34.1

Loops not clustered in ArchDB

1gg4_A_15 - AR
1gg4_A_235 - AR
1gg4_A_23 - AR
1gg4_A_15 - AR
1gg4_A_235 - AR
1gg4_A_23 - AR
1gg4_A_4 - EH
1gg4_A_427 - EH
1gg4_A_353 - EH
1gg4_A_154 - EH
1gg4_A_101 - EH
1gg4_A_214 - EH
1gg4_A_326 - EH
1gg4_A_178 - EH
1gg4_A_39 - EH
1gg4_A_64 - HA
1gg4_A_128 - HA
1gg4_A_249 - HA
1gg4_A_260 - HA
1gg4_A_27 - HA
1gg4_A_128 - HA
1gg4_A_318 - HA
1gg4_A_27 - HA
1gg4_A_64 - HA
1gg4_A_300 - HE
1gg4_A_195 - HE
1gg4_A_119 - HE
1gg4_A_342 - HE
1gg4_A_281 - HH
1gg4_A_111 - HH

1gg4 A - percentage of sequence identity: 100
1gg4 B - percentage of sequence identity: 100