PDB: 1gnl Compound: hybrid cluster protein Classification: HYBRID CLUSTER PROTEIN Entry date in PDB: 2002-04-11 Resolution [Å]: 1.25 R-Factor: 0.130

CHAIN: A SWISS-PROT/TREMBL: Q01770    KEYWORD: 3D-structure    4Fe-4S    Iron    Iron-sulfur    Metal-binding    Oxidoreductase    EC: 1.7.-.- SCOP: e.26.1.1 Multi-domain proteins (alpha and beta)    Prismane protein-like    Prismane protein-like    Hybrid cluster protein (prismane protein)    Hybrid cluster protein (prismane protein)    Desulfovibrio desulfuricans GO:  cytoplasm    iron ion binding    oxidoreductase activity    oxidoreductase activity, acting on other nitrogenous compounds as donors    electron transport    CHAIN: B SWISS-PROT/TREMBL: Q01770    KEYWORD: 3D-structure    4Fe-4S    Iron    Iron-sulfur    Metal-binding    Oxidoreductase    EC: 1.7.-.- SCOP: e.26.1.1 Multi-domain proteins (alpha and beta)    Prismane protein-like    Prismane protein-like    Hybrid cluster protein (prismane protein)    Hybrid cluster protein (prismane protein)    Desulfovibrio desulfuricans GO:  cytoplasm    iron ion binding    oxidoreductase activity    oxidoreductase activity, acting on other nitrogenous compounds as donors    electron transport

Image Source: PDB

Loops in ArchDB40 clusters

1gnl_A_439 - HA => SUBCLASS : 2.1.1
1gnl_A_479 - EH => SUBCLASS : 2.1.3
1gnl_A_443 - AR => SUBCLASS : 1.1.4
1gnl_A_137 - HH => SUBCLASS : 4.7.2
1gnl_A_137 - HH => SUBCLASS : 4.39.1
1gnl_A_28 - HH => SUBCLASS : 5.1.3
1gnl_A_168 - HH => SUBCLASS : 5.4.1
1gnl_A_28 - HH => SUBCLASS : 5.19.1

Loops in ArchDB95 clusters

1gnl_A_137 - HH => SUBCLASS : 4.3.3
1gnl_A_28 - HH => SUBCLASS : 5.1.5
1gnl_A_168 - HH => SUBCLASS : 5.3.1
1gnl_A_28 - HH => SUBCLASS : 5.32.1
1gnl_A_60 - HH => SUBCLASS : 7.20.1

Loops in ArchDB-EC clusters

1gnl_A_60 - HH => SUBCLASS : 7.11.1

Loops not clustered in ArchDB

1gnl_A_443 - AR
1gnl_A_420 - AR
1gnl_A_223 - AR
1gnl_A_420 - AR
1gnl_A_223 - AR
1gnl_A_234 - EH
1gnl_A_506 - EH
1gnl_A_446 - EH
1gnl_A_364 - EH
1gnl_A_392 - EH
1gnl_A_332 - EH
1gnl_A_302 - EH
1gnl_A_280 - EH
1gnl_A_258 - HA
1gnl_A_320 - HA
1gnl_A_320 - HA
1gnl_A_258 - HA
1gnl_A_439 - HA
1gnl_A_488 - HE
1gnl_A_378 - HE
1gnl_A_188 - HE
1gnl_A_242 - HE
1gnl_A_291 - HE
1gnl_A_455 - HE
1gnl_A_407 - HE
1gnl_A_314 - HE
1gnl_A_345 - HE
1gnl_A_110 - HH
1gnl_A_81 - HH
1gnl_A_517 - HH
1gnl_A_371 - HH
1gnl_A_119 - HH

1e1d A - percentage of sequence identity: 65
1e2u A - percentage of sequence identity: 65
1e9v A - percentage of sequence identity: 65
1gn9 A - percentage of sequence identity: 100
1gn9 B - percentage of sequence identity: 100
1gnl A - percentage of sequence identity: 100
1gnl B - percentage of sequence identity: 100
1gnt A - percentage of sequence identity: 65
1oa0 A - percentage of sequence identity: 100
1oa0 B - percentage of sequence identity: 100
1oa1 A - percentage of sequence identity: 65
1upx A - percentage of sequence identity: 100
1upx B - percentage of sequence identity: 100
1w9m A - percentage of sequence identity: 65