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Information on 1gtf
PDB: 1gtf
Compound: trp RNA-binding attenuation protein (trap)
Classification: RNA BINDING PROTEIN/RNA
Entry date in PDB: 2002-04-05
Resolution [Å]: 1.75
R-Factor: 0.194


CHAIN: A
SWISS-PROT/TREMBL: Q9X6J6
   KEYWORD: 3D-structure    RNA-binding    Transcription regulation   
SCOP: b.82.5.1 All beta proteins    Double-stranded beta-helix    TRAP-like    Trp RNA-binding attenuation protein (TRAP)    Trp RNA-binding attenuation protein (TRAP)    Bacillus stearothermophilus
GO:  RNA binding    regulation of transcription, DNA-dependent    transcription termination   


CHAIN: B
SWISS-PROT/TREMBL: Q9X6J6
   KEYWORD: 3D-structure    RNA-binding    Transcription regulation   
SCOP: b.82.5.1 All beta proteins    Double-stranded beta-helix    TRAP-like    Trp RNA-binding attenuation protein (TRAP)    Trp RNA-binding attenuation protein (TRAP)    Bacillus stearothermophilus
GO:  RNA binding    regulation of transcription, DNA-dependent    transcription termination   


CHAIN: C
SWISS-PROT/TREMBL: Q9X6J6
   KEYWORD: 3D-structure    RNA-binding    Transcription regulation   
SCOP: b.82.5.1 All beta proteins    Double-stranded beta-helix    TRAP-like    Trp RNA-binding attenuation protein (TRAP)    Trp RNA-binding attenuation protein (TRAP)    Bacillus stearothermophilus
GO:  RNA binding    regulation of transcription, DNA-dependent    transcription termination   


CHAIN: D
SWISS-PROT/TREMBL: Q9X6J6
   KEYWORD: 3D-structure    RNA-binding    Transcription regulation   
SCOP: b.82.5.1 All beta proteins    Double-stranded beta-helix    TRAP-like    Trp RNA-binding attenuation protein (TRAP)    Trp RNA-binding attenuation protein (TRAP)    Bacillus stearothermophilus
GO:  RNA binding    regulation of transcription, DNA-dependent    transcription termination   


CHAIN: E
SWISS-PROT/TREMBL: Q9X6J6
   KEYWORD: 3D-structure    RNA-binding    Transcription regulation   
SCOP: b.82.5.1 All beta proteins    Double-stranded beta-helix    TRAP-like    Trp RNA-binding attenuation protein (TRAP)    Trp RNA-binding attenuation protein (TRAP)    Bacillus stearothermophilus
GO:  RNA binding    regulation of transcription, DNA-dependent    transcription termination   


CHAIN: F
SWISS-PROT/TREMBL: Q9X6J6
   KEYWORD: 3D-structure    RNA-binding    Transcription regulation   
SCOP: b.82.5.1 All beta proteins    Double-stranded beta-helix    TRAP-like    Trp RNA-binding attenuation protein (TRAP)    Trp RNA-binding attenuation protein (TRAP)    Bacillus stearothermophilus
GO:  RNA binding    regulation of transcription, DNA-dependent    transcription termination   


CHAIN: G
SWISS-PROT/TREMBL: Q9X6J6
   KEYWORD: 3D-structure    RNA-binding    Transcription regulation   
SCOP: b.82.5.1 All beta proteins    Double-stranded beta-helix    TRAP-like    Trp RNA-binding attenuation protein (TRAP)    Trp RNA-binding attenuation protein (TRAP)    Bacillus stearothermophilus
GO:  RNA binding    regulation of transcription, DNA-dependent    transcription termination   


CHAIN: H
SWISS-PROT/TREMBL: Q9X6J6
   KEYWORD: 3D-structure    RNA-binding    Transcription regulation   
SCOP: b.82.5.1 All beta proteins    Double-stranded beta-helix    TRAP-like    Trp RNA-binding attenuation protein (TRAP)    Trp RNA-binding attenuation protein (TRAP)    Bacillus stearothermophilus
GO:  RNA binding    regulation of transcription, DNA-dependent    transcription termination   


CHAIN: I
SWISS-PROT/TREMBL: Q9X6J6
   KEYWORD: 3D-structure    RNA-binding    Transcription regulation   
SCOP: b.82.5.1 All beta proteins    Double-stranded beta-helix    TRAP-like    Trp RNA-binding attenuation protein (TRAP)    Trp RNA-binding attenuation protein (TRAP)    Bacillus stearothermophilus
GO:  RNA binding    regulation of transcription, DNA-dependent    transcription termination   


CHAIN: J
SWISS-PROT/TREMBL: Q9X6J6
   KEYWORD: 3D-structure    RNA-binding    Transcription regulation   
SCOP: b.82.5.1 All beta proteins    Double-stranded beta-helix    TRAP-like    Trp RNA-binding attenuation protein (TRAP)    Trp RNA-binding attenuation protein (TRAP)    Bacillus stearothermophilus
GO:  RNA binding    regulation of transcription, DNA-dependent    transcription termination   


CHAIN: K
SWISS-PROT/TREMBL: Q9X6J6
   KEYWORD: 3D-structure    RNA-binding    Transcription regulation   
SCOP: b.82.5.1 All beta proteins    Double-stranded beta-helix    TRAP-like    Trp RNA-binding attenuation protein (TRAP)    Trp RNA-binding attenuation protein (TRAP)    Bacillus stearothermophilus
GO:  RNA binding    regulation of transcription, DNA-dependent    transcription termination   


CHAIN: L
SWISS-PROT/TREMBL: Q9X6J6
   KEYWORD: 3D-structure    RNA-binding    Transcription regulation   
SCOP: b.82.5.1 All beta proteins    Double-stranded beta-helix    TRAP-like    Trp RNA-binding attenuation protein (TRAP)    Trp RNA-binding attenuation protein (TRAP)    Bacillus stearothermophilus
GO:  RNA binding    regulation of transcription, DNA-dependent    transcription termination   


CHAIN: M
SWISS-PROT/TREMBL: Q9X6J6
   KEYWORD: 3D-structure    RNA-binding    Transcription regulation   
SCOP: b.82.5.1 All beta proteins    Double-stranded beta-helix    TRAP-like    Trp RNA-binding attenuation protein (TRAP)    Trp RNA-binding attenuation protein (TRAP)    Bacillus stearothermophilus
GO:  RNA binding    regulation of transcription, DNA-dependent    transcription termination   


CHAIN: N
SWISS-PROT/TREMBL: Q9X6J6
   KEYWORD: 3D-structure    RNA-binding    Transcription regulation   
SCOP: b.82.5.1 All beta proteins    Double-stranded beta-helix    TRAP-like    Trp RNA-binding attenuation protein (TRAP)    Trp RNA-binding attenuation protein (TRAP)    Bacillus stearothermophilus
GO:  RNA binding    regulation of transcription, DNA-dependent    transcription termination   


CHAIN: O
SWISS-PROT/TREMBL: Q9X6J6
   KEYWORD: 3D-structure    RNA-binding    Transcription regulation   
SCOP: b.82.5.1 All beta proteins    Double-stranded beta-helix    TRAP-like    Trp RNA-binding attenuation protein (TRAP)    Trp RNA-binding attenuation protein (TRAP)    Bacillus stearothermophilus
GO:  RNA binding    regulation of transcription, DNA-dependent    transcription termination   


CHAIN: P
SWISS-PROT/TREMBL: Q9X6J6
   KEYWORD: 3D-structure    RNA-binding    Transcription regulation   
SCOP: b.82.5.1 All beta proteins    Double-stranded beta-helix    TRAP-like    Trp RNA-binding attenuation protein (TRAP)    Trp RNA-binding attenuation protein (TRAP)    Bacillus stearothermophilus
GO:  RNA binding    regulation of transcription, DNA-dependent    transcription termination   


CHAIN: Q
SWISS-PROT/TREMBL: Q9X6J6
   KEYWORD: 3D-structure    RNA-binding    Transcription regulation   
SCOP: b.82.5.1 All beta proteins    Double-stranded beta-helix    TRAP-like    Trp RNA-binding attenuation protein (TRAP)    Trp RNA-binding attenuation protein (TRAP)    Bacillus stearothermophilus
GO:  RNA binding    regulation of transcription, DNA-dependent    transcription termination   


CHAIN: R
SWISS-PROT/TREMBL: Q9X6J6
   KEYWORD: 3D-structure    RNA-binding    Transcription regulation   
SCOP: b.82.5.1 All beta proteins    Double-stranded beta-helix    TRAP-like    Trp RNA-binding attenuation protein (TRAP)    Trp RNA-binding attenuation protein (TRAP)    Bacillus stearothermophilus
GO:  RNA binding    regulation of transcription, DNA-dependent    transcription termination   


CHAIN: S
SWISS-PROT/TREMBL: Q9X6J6
   KEYWORD: 3D-structure    RNA-binding    Transcription regulation   
SCOP: b.82.5.1 All beta proteins    Double-stranded beta-helix    TRAP-like    Trp RNA-binding attenuation protein (TRAP)    Trp RNA-binding attenuation protein (TRAP)    Bacillus stearothermophilus
GO:  RNA binding    regulation of transcription, DNA-dependent    transcription termination   


CHAIN: T
SWISS-PROT/TREMBL: Q9X6J6
   KEYWORD: 3D-structure    RNA-binding    Transcription regulation   
SCOP: b.82.5.1 All beta proteins    Double-stranded beta-helix    TRAP-like    Trp RNA-binding attenuation protein (TRAP)    Trp RNA-binding attenuation protein (TRAP)    Bacillus stearothermophilus
GO:  RNA binding    regulation of transcription, DNA-dependent    transcription termination   


CHAIN: U
SWISS-PROT/TREMBL: Q9X6J6
   KEYWORD: 3D-structure    RNA-binding    Transcription regulation   
SCOP: b.82.5.1 All beta proteins    Double-stranded beta-helix    TRAP-like    Trp RNA-binding attenuation protein (TRAP)    Trp RNA-binding attenuation protein (TRAP)    Bacillus stearothermophilus
GO:  RNA binding    regulation of transcription, DNA-dependent    transcription termination   


CHAIN: V
SWISS-PROT/TREMBL: Q9X6J6
   KEYWORD: 3D-structure    RNA-binding    Transcription regulation   
SCOP: b.82.5.1 All beta proteins    Double-stranded beta-helix    TRAP-like    Trp RNA-binding attenuation protein (TRAP)    Trp RNA-binding attenuation protein (TRAP)    Bacillus stearothermophilus
GO:  RNA binding    regulation of transcription, DNA-dependent    transcription termination   
1gtf Image
Image Source: PDB

Stored Loops of 1gtf

Loops in ArchDB40 clusters

1gtf_A_61 - HA => SUBCLASS : 2.2.2
1gtf_A_19 - HA => SUBCLASS : 5.14.1
1gtf_A_52 - AR => SUBCLASS : 2.3.2
1gtf_A_52 - AR => SUBCLASS : 2.3.4
1gtf_A_32 - AR => SUBCLASS : 3.1.1
1gtf_A_32 - AR => SUBCLASS : 3.3.1
1gtf_A_9 - AR => SUBCLASS : 4.11.1

Loops in ArchDB95 clusters

1gtf_A_32 - AR => SUBCLASS : 1.1.1
1gtf_A_32 - AR => SUBCLASS : 1.1.2
1gtf_A_52 - AR => SUBCLASS : 2.7.3
1gtf_A_32 - AR => SUBCLASS : 3.3.1
1gtf_A_9 - AR => SUBCLASS : 4.10.1
1gtf_A_61 - HA => SUBCLASS : 2.2.2
1gtf_A_19 - HA => SUBCLASS : 5.13.1

Loops not clustered in ArchDB

1gtf_A_43 - AR

Homologous structures to 1gtf classified in ArchDB

1c9s A - percentage of sequence identity: 100
1c9s B - percentage of sequence identity: 100
1c9s C - percentage of sequence identity: 100
1c9s D - percentage of sequence identity: 100
1c9s E - percentage of sequence identity: 100
1c9s F - percentage of sequence identity: 100
1c9s G - percentage of sequence identity: 100
1c9s H - percentage of sequence identity: 100
1c9s I - percentage of sequence identity: 100
1c9s J - percentage of sequence identity: 100
1c9s K - percentage of sequence identity: 100
1c9s L - percentage of sequence identity: 100
1c9s M - percentage of sequence identity: 100
1c9s N - percentage of sequence identity: 100
1c9s O - percentage of sequence identity: 100
1c9s P - percentage of sequence identity: 100
1c9s Q - percentage of sequence identity: 100
1c9s R - percentage of sequence identity: 100
1c9s S - percentage of sequence identity: 100
1c9s T - percentage of sequence identity: 100
1c9s U - percentage of sequence identity: 100
1c9s V - percentage of sequence identity: 100
1gtf A - percentage of sequence identity: 100
1gtf B - percentage of sequence identity: 100
1gtf C - percentage of sequence identity: 100
1gtf D - percentage of sequence identity: 100
1gtf E - percentage of sequence identity: 100
1gtf F - percentage of sequence identity: 100
1gtf G - percentage of sequence identity: 100
1gtf H - percentage of sequence identity: 100
1gtf I - percentage of sequence identity: 100
1gtf J - percentage of sequence identity: 100
1gtf K - percentage of sequence identity: 100
1gtf L - percentage of sequence identity: 100
1gtf M - percentage of sequence identity: 100
1gtf N - percentage of sequence identity: 100
1gtf O - percentage of sequence identity: 100
1gtf P - percentage of sequence identity: 100
1gtf Q - percentage of sequence identity: 100
1gtf R - percentage of sequence identity: 100
1gtf S - percentage of sequence identity: 100
1gtf T - percentage of sequence identity: 100
1gtf U - percentage of sequence identity: 100
1gtf V - percentage of sequence identity: 100
1gtn A - percentage of sequence identity: 100
1gtn B - percentage of sequence identity: 100
1gtn C - percentage of sequence identity: 100
1gtn D - percentage of sequence identity: 100
1gtn E - percentage of sequence identity: 100
1gtn F - percentage of sequence identity: 100
1gtn G - percentage of sequence identity: 100
1gtn H - percentage of sequence identity: 100
1gtn I - percentage of sequence identity: 100
1gtn J - percentage of sequence identity: 100
1gtn K - percentage of sequence identity: 100
1gtn L - percentage of sequence identity: 100
1gtn M - percentage of sequence identity: 100
1gtn N - percentage of sequence identity: 100
1gtn O - percentage of sequence identity: 100
1gtn P - percentage of sequence identity: 100
1gtn Q - percentage of sequence identity: 100
1gtn R - percentage of sequence identity: 100
1gtn S - percentage of sequence identity: 100
1gtn T - percentage of sequence identity: 100
1gtn U - percentage of sequence identity: 100
1gtn V - percentage of sequence identity: 100
1qaw A - percentage of sequence identity: 100
1qaw B - percentage of sequence identity: 100
1qaw C - percentage of sequence identity: 100
1qaw D - percentage of sequence identity: 100
1qaw E - percentage of sequence identity: 100
1qaw F - percentage of sequence identity: 100
1qaw G - percentage of sequence identity: 100
1qaw H - percentage of sequence identity: 100
1qaw I - percentage of sequence identity: 100
1qaw J - percentage of sequence identity: 100
1qaw K - percentage of sequence identity: 100
1utd A - percentage of sequence identity: 100
1utd B - percentage of sequence identity: 100
1utd C - percentage of sequence identity: 100
1utd D - percentage of sequence identity: 100
1utd E - percentage of sequence identity: 100
1utd F - percentage of sequence identity: 100
1utd G - percentage of sequence identity: 100
1utd H - percentage of sequence identity: 100
1utd I - percentage of sequence identity: 100
1utd J - percentage of sequence identity: 100
1utd K - percentage of sequence identity: 100
1utd L - percentage of sequence identity: 100
1utd M - percentage of sequence identity: 100
1utd N - percentage of sequence identity: 100
1utd O - percentage of sequence identity: 100
1utd P - percentage of sequence identity: 100
1utd Q - percentage of sequence identity: 100
1utd R - percentage of sequence identity: 100
1utd S - percentage of sequence identity: 100
1utd T - percentage of sequence identity: 100
1utd U - percentage of sequence identity: 100
1utd V - percentage of sequence identity: 100
1utf A - percentage of sequence identity: 100
1utf B - percentage of sequence identity: 100
1utf C - percentage of sequence identity: 100
1utf D - percentage of sequence identity: 100
1utf E - percentage of sequence identity: 100
1utf F - percentage of sequence identity: 100
1utf G - percentage of sequence identity: 100
1utf H - percentage of sequence identity: 100
1utf I - percentage of sequence identity: 100
1utf J - percentage of sequence identity: 100
1utf K - percentage of sequence identity: 100
1utf L - percentage of sequence identity: 100
1utf M - percentage of sequence identity: 100
1utf N - percentage of sequence identity: 100
1utf O - percentage of sequence identity: 100
1utf P - percentage of sequence identity: 100
1utf Q - percentage of sequence identity: 100
1utf R - percentage of sequence identity: 100
1utf S - percentage of sequence identity: 100
1utf T - percentage of sequence identity: 100
1utf U - percentage of sequence identity: 100
1utf V - percentage of sequence identity: 100
1utv A - percentage of sequence identity: 100
1utv B - percentage of sequence identity: 100
1utv C - percentage of sequence identity: 100
1utv D - percentage of sequence identity: 100
1utv E - percentage of sequence identity: 100
1utv F - percentage of sequence identity: 100
1utv G - percentage of sequence identity: 100
1utv H - percentage of sequence identity: 100
1utv I - percentage of sequence identity: 100
1utv J - percentage of sequence identity: 100
1utv K - percentage of sequence identity: 100
1utv L - percentage of sequence identity: 100
1utv M - percentage of sequence identity: 100
1utv N - percentage of sequence identity: 100
1utv O - percentage of sequence identity: 100
1utv P - percentage of sequence identity: 100
1utv Q - percentage of sequence identity: 100
1utv R - percentage of sequence identity: 100
1utv S - percentage of sequence identity: 100
1utv T - percentage of sequence identity: 100
1utv U - percentage of sequence identity: 100
1utv V - percentage of sequence identity: 100
1wap A - percentage of sequence identity: 81
1wap B - percentage of sequence identity: 81
1wap C - percentage of sequence identity: 81
1wap D - percentage of sequence identity: 81
1wap E - percentage of sequence identity: 81
1wap F - percentage of sequence identity: 81
1wap G - percentage of sequence identity: 81
1wap H - percentage of sequence identity: 81
1wap I - percentage of sequence identity: 81
1wap J - percentage of sequence identity: 81
1wap K - percentage of sequence identity: 81
1wap L - percentage of sequence identity: 81
1wap M - percentage of sequence identity: 81
1wap N - percentage of sequence identity: 81
1wap O - percentage of sequence identity: 81
1wap P - percentage of sequence identity: 81
1wap Q - percentage of sequence identity: 81
1wap R - percentage of sequence identity: 81
1wap S - percentage of sequence identity: 81
1wap T - percentage of sequence identity: 81
1wap U - percentage of sequence identity: 81
1wap V - percentage of sequence identity: 81