PDB: 1gz0 Compound: hypothetical trnaRRNA METHYLTRANSFERASE yjfh Classification: TRANSFERASE Entry date in PDB: 2002-10-17 Resolution [Å]: 2.50 R-Factor: 0.231

CHAIN: A SWISS-PROT/TREMBL: P39290    KEYWORD: 3D-structure    Complete proteome    Hypothetical protein    Methyltransferase    Transferase    EC: 2.1.1.- SCOP: c.116.1.1 Alpha and beta proteins (a/b)    alpha/beta knot    alpha/beta knot    SpoU-like RNA 2'-O ribose methyltransferase    RlmB, C-terminal domain    Escherichia coli SCOP: d.79.3.3 Alpha and beta proteins (a+b)    Bacillus chorismate mutase-like    L30e-like    RNA 2'-O ribose methyltransferase substrate binding domain    RlmB, N-terminal domain    Escherichia coli GO:  RNA binding    RNA methyltransferase activity    RNA modification    RNA processing    CHAIN: B SWISS-PROT/TREMBL: P39290    KEYWORD: 3D-structure    Complete proteome    Hypothetical protein    Methyltransferase    Transferase    EC: 2.1.1.- SCOP: c.116.1.1 Alpha and beta proteins (a/b)    alpha/beta knot    alpha/beta knot    SpoU-like RNA 2'-O ribose methyltransferase    RlmB, C-terminal domain    Escherichia coli SCOP: d.79.3.3 Alpha and beta proteins (a+b)    Bacillus chorismate mutase-like    L30e-like    RNA 2'-O ribose methyltransferase substrate binding domain    RlmB, N-terminal domain    Escherichia coli GO:  RNA binding    RNA methyltransferase activity    RNA modification    RNA processing    CHAIN: C SWISS-PROT/TREMBL: P39290    KEYWORD: 3D-structure    Complete proteome    Hypothetical protein    Methyltransferase    Transferase    EC: 2.1.1.- SCOP: c.116.1.1 Alpha and beta proteins (a/b)    alpha/beta knot    alpha/beta knot    SpoU-like RNA 2'-O ribose methyltransferase    RlmB, C-terminal domain    Escherichia coli SCOP: d.79.3.3 Alpha and beta proteins (a+b)    Bacillus chorismate mutase-like    L30e-like    RNA 2'-O ribose methyltransferase substrate binding domain    RlmB, N-terminal domain    Escherichia coli GO:  RNA binding    RNA methyltransferase activity    RNA modification    RNA processing    CHAIN: D SWISS-PROT/TREMBL: P39290    KEYWORD: 3D-structure    Complete proteome    Hypothetical protein    Methyltransferase    Transferase    EC: 2.1.1.- SCOP: c.116.1.1 Alpha and beta proteins (a/b)    alpha/beta knot    alpha/beta knot    SpoU-like RNA 2'-O ribose methyltransferase    RlmB, C-terminal domain    Escherichia coli SCOP: d.79.3.3 Alpha and beta proteins (a+b)    Bacillus chorismate mutase-like    L30e-like    RNA 2'-O ribose methyltransferase substrate binding domain    RlmB, N-terminal domain    Escherichia coli GO:  RNA binding    RNA methyltransferase activity    RNA modification    RNA processing    CHAIN: E SWISS-PROT/TREMBL: P39290    KEYWORD: 3D-structure    Complete proteome    Hypothetical protein    Methyltransferase    Transferase    EC: 2.1.1.- SCOP: c.116.1.1 Alpha and beta proteins (a/b)    alpha/beta knot    alpha/beta knot    SpoU-like RNA 2'-O ribose methyltransferase    RlmB, C-terminal domain    Escherichia coli GO:  RNA binding    RNA methyltransferase activity    RNA modification    RNA processing    CHAIN: F SWISS-PROT/TREMBL: P39290    KEYWORD: 3D-structure    Complete proteome    Hypothetical protein    Methyltransferase    Transferase    EC: 2.1.1.- SCOP: c.116.1.1 Alpha and beta proteins (a/b)    alpha/beta knot    alpha/beta knot    SpoU-like RNA 2'-O ribose methyltransferase    RlmB, C-terminal domain    Escherichia coli SCOP: d.79.3.3 Alpha and beta proteins (a+b)    Bacillus chorismate mutase-like    L30e-like    RNA 2'-O ribose methyltransferase substrate binding domain    RlmB, N-terminal domain    Escherichia coli GO:  RNA binding    RNA methyltransferase activity    RNA modification    RNA processing    CHAIN: G SWISS-PROT/TREMBL: P39290    KEYWORD: 3D-structure    Complete proteome    Hypothetical protein    Methyltransferase    Transferase    EC: 2.1.1.- SCOP: c.116.1.1 Alpha and beta proteins (a/b)    alpha/beta knot    alpha/beta knot    SpoU-like RNA 2'-O ribose methyltransferase    RlmB, C-terminal domain    Escherichia coli GO:  RNA binding    RNA methyltransferase activity    RNA modification    RNA processing    CHAIN: H SWISS-PROT/TREMBL: P39290    KEYWORD: 3D-structure    Complete proteome    Hypothetical protein    Methyltransferase    Transferase    EC: 2.1.1.- SCOP: c.116.1.1 Alpha and beta proteins (a/b)    alpha/beta knot    alpha/beta knot    SpoU-like RNA 2'-O ribose methyltransferase    RlmB, C-terminal domain    Escherichia coli SCOP: d.79.3.3 Alpha and beta proteins (a+b)    Bacillus chorismate mutase-like    L30e-like    RNA 2'-O ribose methyltransferase substrate binding domain    RlmB, N-terminal domain    Escherichia coli GO:  RNA binding    RNA methyltransferase activity    RNA modification    RNA processing

Image Source: PDB

Loops in ArchDB40 clusters

1gz0_A_49 - EH => SUBCLASS : 1.1.30
1gz0_A_49 - EH => SUBCLASS : 1.1.31
1gz0_A_136 - HH => SUBCLASS : 2.12.1

Loops in ArchDB95 clusters

1gz0_F_49 - EH => SUBCLASS : 1.1.1
1gz0_F_49 - EH => SUBCLASS : 1.1.2
1gz0_F_136 - HH => SUBCLASS : 2.10.1
1gz0_A_136 - HH => SUBCLASS : 2.10.1
1gz0_A_145 - HE => SUBCLASS : 0.1.5
1gz0_A_37 - HE => SUBCLASS : 1.1.1
1gz0_F_37 - HE => SUBCLASS : 1.1.1
1gz0_A_204 - HE => SUBCLASS : 2.2.3
1gz0_A_106 - HE => SUBCLASS : 3.1.1
1gz0_A_85 - HE => SUBCLASS : 4.3.2
1gz0_A_85 - HE => SUBCLASS : 4.3.3
1gz0_A_85 - HE => SUBCLASS : 4.3.8
1gz0_A_8 - HE => SUBCLASS : 4.6.5
1gz0_F_13 - HE => SUBCLASS : 4.6.5

Loops in ArchDB-EC clusters

1gz0_A_136 - HH => SUBCLASS : 2.9.1

Loops not clustered in ArchDB

1gz0_A_180 - AR
1gz0_A_170 - AR
1gz0_A_151 - AR
1gz0_F_151 - AR
1gz0_A_180 - AR
1gz0_A_170 - AR
1gz0_A_151 - AR
1gz0_F_96 - EH
1gz0_F_123 - EH
1gz0_F_191 - EH
1gz0_F_212 - EH
1gz0_F_73 - EH
1gz0_F_22 - EH
1gz0_A_22 - EH
1gz0_A_70 - EH
1gz0_A_212 - EH
1gz0_A_191 - EH
1gz0_A_123 - EH
1gz0_A_96 - EH
1gz0_F_170 - HA
1gz0_F_85 - HE
1gz0_F_145 - HE
1gz0_F_204 - HE
1gz0_F_55 - HE
1gz0_A_56 - HE
1gz0_F_106 - HE
1gz0_F_8 - HH

1gz0 A - percentage of sequence identity: 100
1gz0 B - percentage of sequence identity: 100
1gz0 C - percentage of sequence identity: 100
1gz0 D - percentage of sequence identity: 100
1gz0 E - percentage of sequence identity: 100
1gz0 F - percentage of sequence identity: 100
1gz0 G - percentage of sequence identity: 100
1gz0 H - percentage of sequence identity: 100