PDB: 1ijq Compound: low-density lipoprotein receptor Classification: LIPID TRANSPORT Entry date in PDB: 2001-05-23 Resolution [Å]: 1.50 R-Factor: 0.208

CHAIN: A SWISS-PROT/TREMBL: P01130    KEYWORD: 3D-structure    Cholesterol metabolism    Coated pits    Disease mutation    EGF-like domain    Endocytosis    Glycoprotein    LDL    Lipid transport    Polymorphism    Receptor    Repeat    Signal    Transmembrane    SCOP: b.68.5.1 All beta proteins    6-bladed beta-propeller    YWTD domain    YWTD domain    Low density lipoprotein (LDL) receptor    Human (Homo sapiens) SCOP: g.3.11.1 Small proteins    Knottins (small inhibitors, toxins, lectins)    EGF/Laminin    EGF-type module    Low density lipoprotein (LDL) receptor, different EGF domains    Human (Homo sapiens) GO:  membrane    calcium ion binding    CHAIN: B SWISS-PROT/TREMBL: P01130    KEYWORD: 3D-structure    Cholesterol metabolism    Coated pits    Disease mutation    EGF-like domain    Endocytosis    Glycoprotein    LDL    Lipid transport    Polymorphism    Receptor    Repeat    Signal    Transmembrane    SCOP: b.68.5.1 All beta proteins    6-bladed beta-propeller    YWTD domain    YWTD domain    Low density lipoprotein (LDL) receptor    Human (Homo sapiens) SCOP: g.3.11.1 Small proteins    Knottins (small inhibitors, toxins, lectins)    EGF/Laminin    EGF-type module    Low density lipoprotein (LDL) receptor, different EGF domains    Human (Homo sapiens) GO:  membrane    calcium ion binding

Image Source: PDB

Loops in ArchDB40 clusters

1ijq_A_587 - HA => SUBCLASS : 2.3.1
1ijq_A_379 - HA => SUBCLASS : 3.3.1
1ijq_A_408 - HA => SUBCLASS : 4.1.1
1ijq_A_553 - HA => SUBCLASS : 4.1.1
1ijq_A_419 - HA => SUBCLASS : 4.1.1
1ijq_A_498 - HA => SUBCLASS : 4.1.1
1ijq_A_457 - HA => SUBCLASS : 4.1.1
1ijq_A_466 - HA => SUBCLASS : 4.1.1
1ijq_A_596 - HA => SUBCLASS : 4.1.1
1ijq_A_542 - HA => SUBCLASS : 4.1.1
1ijq_A_520 - HA => SUBCLASS : 4.9.1
1ijq_A_476 - HA => SUBCLASS : 4.9.1
1ijq_A_682 - HA => SUBCLASS : 5.2.1
1ijq_A_682 - HA => SUBCLASS : 5.2.2
1ijq_A_509 - HA => SUBCLASS : 5.24.1
1ijq_A_563 - HA => SUBCLASS : 6.14.1
1ijq_A_388 - HA => SUBCLASS : 6.14.1
1ijq_A_673 - AR => SUBCLASS : 3.6.3
1ijq_A_487 - AR => SUBCLASS : 4.1.1
1ijq_A_487 - AR => SUBCLASS : 4.1.2
1ijq_A_673 - AR => SUBCLASS : 4.4.5

Loops in ArchDB95 clusters

1ijq_A_487 - AR => SUBCLASS : 3.3.3
1ijq_A_487 - AR => SUBCLASS : 3.5.1
1ijq_A_673 - AR => SUBCLASS : 4.5.1
1ijq_A_587 - HA => SUBCLASS : 2.3.1
1ijq_A_379 - HA => SUBCLASS : 3.6.1
1ijq_A_408 - HA => SUBCLASS : 4.1.1
1ijq_A_553 - HA => SUBCLASS : 4.1.1
1ijq_A_419 - HA => SUBCLASS : 4.1.1
1ijq_A_498 - HA => SUBCLASS : 4.1.1
1ijq_A_457 - HA => SUBCLASS : 4.1.1
1ijq_A_466 - HA => SUBCLASS : 4.1.1
1ijq_A_596 - HA => SUBCLASS : 4.1.1
1ijq_A_542 - HA => SUBCLASS : 4.1.1
1ijq_A_520 - HA => SUBCLASS : 4.8.1
1ijq_A_476 - HA => SUBCLASS : 4.8.1
1ijq_A_682 - HA => SUBCLASS : 5.2.2
1ijq_A_509 - HA => SUBCLASS : 5.16.1
1ijq_A_563 - HA => SUBCLASS : 6.19.1
1ijq_A_388 - HA => SUBCLASS : 6.19.1

Loops not clustered in ArchDB

1ijq_A_399 - AR
1ijq_A_445 - AR
1ijq_A_531 - AR
1ijq_A_575 - AR
1ijq_A_619 - AR
1ijq_A_631 - AR
1ijq_A_429 - HA
1ijq_A_606 - HA
1ijq_A_659 - HA

1ijq A - percentage of sequence identity: 100
1ijq B - percentage of sequence identity: 100
1n7d A - percentage of sequence identity: 99