PDB: 1k0d Compound: ure2 protein Classification: GENE REGULATION Entry date in PDB: 2001-12-21 Resolution [Å]: 2.20 R-Factor: 0.213

CHAIN: A SWISS-PROT/TREMBL: P23202    KEYWORD: 3D-structure    Nitrate assimilation    Prion    SCOP: a.45.1.1 All alpha proteins    Glutathione S-transferase (GST), C-terminal domain    Glutathione S-transferase (GST), C-terminal domain    Glutathione S-transferase (GST), C-terminal domain    Yeast prion protein ure2p, nitrogen regulation fragment    Baker's yeast (Saccharomyces cerevisiae) SCOP: c.47.1.5 Alpha and beta proteins (a/b)    Thioredoxin fold    Thioredoxin-like    Glutathione S-transferase (GST), N-terminal domain    Yeast prion protein ure2p, nitrogen regulation fragment    Baker's yeast (Saccharomyces cerevisiae) GO:   CHAIN: B SWISS-PROT/TREMBL: P23202    KEYWORD: 3D-structure    Nitrate assimilation    Prion    SCOP: a.45.1.1 All alpha proteins    Glutathione S-transferase (GST), C-terminal domain    Glutathione S-transferase (GST), C-terminal domain    Glutathione S-transferase (GST), C-terminal domain    Yeast prion protein ure2p, nitrogen regulation fragment    Baker's yeast (Saccharomyces cerevisiae) SCOP: c.47.1.5 Alpha and beta proteins (a/b)    Thioredoxin fold    Thioredoxin-like    Glutathione S-transferase (GST), N-terminal domain    Yeast prion protein ure2p, nitrogen regulation fragment    Baker's yeast (Saccharomyces cerevisiae) GO:   CHAIN: C SWISS-PROT/TREMBL: P23202    KEYWORD: 3D-structure    Nitrate assimilation    Prion    SCOP: a.45.1.1 All alpha proteins    Glutathione S-transferase (GST), C-terminal domain    Glutathione S-transferase (GST), C-terminal domain    Glutathione S-transferase (GST), C-terminal domain    Yeast prion protein ure2p, nitrogen regulation fragment    Baker's yeast (Saccharomyces cerevisiae) SCOP: c.47.1.5 Alpha and beta proteins (a/b)    Thioredoxin fold    Thioredoxin-like    Glutathione S-transferase (GST), N-terminal domain    Yeast prion protein ure2p, nitrogen regulation fragment    Baker's yeast (Saccharomyces cerevisiae) GO:   CHAIN: D SWISS-PROT/TREMBL: P23202    KEYWORD: 3D-structure    Nitrate assimilation    Prion    SCOP: a.45.1.1 All alpha proteins    Glutathione S-transferase (GST), C-terminal domain    Glutathione S-transferase (GST), C-terminal domain    Glutathione S-transferase (GST), C-terminal domain    Yeast prion protein ure2p, nitrogen regulation fragment    Baker's yeast (Saccharomyces cerevisiae) SCOP: c.47.1.5 Alpha and beta proteins (a/b)    Thioredoxin fold    Thioredoxin-like    Glutathione S-transferase (GST), N-terminal domain    Yeast prion protein ure2p, nitrogen regulation fragment    Baker's yeast (Saccharomyces cerevisiae) GO:

Image Source: PDB

Loops in ArchDB40 clusters

1k0d_A_123 - HE => SUBCLASS : 2.1.1
1k0d_A_167 - HA => SUBCLASS : 5.7.1
1k0d_A_114 - EH => SUBCLASS : 3.1.1
1k0d_A_139 - EH => SUBCLASS : 9.13.1
1k0d_A_332 - HH => SUBCLASS : 1.1.3
1k0d_A_332 - HH => SUBCLASS : 1.1.8

Loops in ArchDB95 clusters

1k0d_A_114 - EH => SUBCLASS : 3.2.1
1k0d_A_139 - EH => SUBCLASS : 9.5.1
1k0d_D_139 - EH => SUBCLASS : 9.5.1
1k0d_A_332 - HH => SUBCLASS : 1.1.1
1k0d_A_332 - HH => SUBCLASS : 1.1.4
1k0d_A_224 - HH => SUBCLASS : 5.34.1
1k0d_D_224 - HH => SUBCLASS : 5.34.1
1k0d_A_123 - HE => SUBCLASS : 2.1.1
1k0d_D_123 - HE => SUBCLASS : 2.1.1
1k0d_A_154 - HE => SUBCLASS : 7.1.2
1k0d_D_167 - HA => SUBCLASS : 5.7.1
1k0d_A_167 - HA => SUBCLASS : 5.7.1

Loops not clustered in ArchDB

1k0d_A_176 - EH
1k0d_D_176 - EH
1k0d_D_114 - EH
1k0d_D_154 - HE
1k0d_D_100 - HE
1k0d_A_314 - HH
1k0d_D_327 - HH
1k0d_D_314 - HH
1k0d_D_308 - HH
1k0d_D_242 - HH
1k0d_D_206 - HH
1k0d_D_181 - HH
1k0d_A_181 - HH
1k0d_A_206 - HH
1k0d_A_242 - HH
1k0d_A_308 - HH
1k0d_A_327 - HH
1k0d_D_332 - HH

1g6w A - percentage of sequence identity: 100
1g6w B - percentage of sequence identity: 100
1g6w C - percentage of sequence identity: 100
1g6w D - percentage of sequence identity: 100
1g6y A - percentage of sequence identity: 100
1g6y B - percentage of sequence identity: 100
1hqo A - percentage of sequence identity: 100
1hqo B - percentage of sequence identity: 100
1jzr A - percentage of sequence identity: 100
1jzr B - percentage of sequence identity: 100
1jzr C - percentage of sequence identity: 100
1jzr D - percentage of sequence identity: 100
1k0a A - percentage of sequence identity: 100
1k0a B - percentage of sequence identity: 100
1k0b A - percentage of sequence identity: 100
1k0b B - percentage of sequence identity: 100
1k0b C - percentage of sequence identity: 100
1k0b D - percentage of sequence identity: 100
1k0c A - percentage of sequence identity: 100
1k0c B - percentage of sequence identity: 100
1k0c C - percentage of sequence identity: 100
1k0c D - percentage of sequence identity: 100
1k0d A - percentage of sequence identity: 100
1k0d B - percentage of sequence identity: 100
1k0d C - percentage of sequence identity: 100
1k0d D - percentage of sequence identity: 100