PDB: 1k5j Compound: nucleoplasmin core Classification: CHAPERONE Entry date in PDB: 2001-11-01 Resolution [Å]: 2.30 R-Factor: 0.219

CHAIN: A SWISS-PROT/TREMBL: P05221    KEYWORD: 3D-structure    Nuclear protein    Phosphorylation    SCOP: b.121.3.1 All beta proteins    Nucleoplasmin-like/VP (viral coat and capsid proteins)    Nucleoplasmin-like core domain    Nucleoplasmin-like core domain    Nucleoplasmin core    Xenopus laevis GO:  nucleus    nucleic acid binding    CHAIN: B SWISS-PROT/TREMBL: P05221    KEYWORD: 3D-structure    Nuclear protein    Phosphorylation    SCOP: b.121.3.1 All beta proteins    Nucleoplasmin-like/VP (viral coat and capsid proteins)    Nucleoplasmin-like core domain    Nucleoplasmin-like core domain    Nucleoplasmin core    Xenopus laevis GO:  nucleus    nucleic acid binding    CHAIN: C SWISS-PROT/TREMBL: P05221    KEYWORD: 3D-structure    Nuclear protein    Phosphorylation    SCOP: b.121.3.1 All beta proteins    Nucleoplasmin-like/VP (viral coat and capsid proteins)    Nucleoplasmin-like core domain    Nucleoplasmin-like core domain    Nucleoplasmin core    Xenopus laevis GO:  nucleus    nucleic acid binding    CHAIN: D SWISS-PROT/TREMBL: P05221    KEYWORD: 3D-structure    Nuclear protein    Phosphorylation    SCOP: b.121.3.1 All beta proteins    Nucleoplasmin-like/VP (viral coat and capsid proteins)    Nucleoplasmin-like core domain    Nucleoplasmin-like core domain    Nucleoplasmin core    Xenopus laevis GO:  nucleus    nucleic acid binding    CHAIN: E SWISS-PROT/TREMBL: P05221    KEYWORD: 3D-structure    Nuclear protein    Phosphorylation    SCOP: b.121.3.1 All beta proteins    Nucleoplasmin-like/VP (viral coat and capsid proteins)    Nucleoplasmin-like core domain    Nucleoplasmin-like core domain    Nucleoplasmin core    Xenopus laevis GO:  nucleus    nucleic acid binding

Image Source: PDB

Loops in ArchDB40 clusters

1k5j_A_88 - AR => SUBCLASS : 3.1.6
1k5j_A_18 - AR => SUBCLASS : 4.9.2

Loops in ArchDB95 clusters

1k5j_A_88 - AR => SUBCLASS : 2.6.2
1k5j_A_18 - AR => SUBCLASS : 4.39.1

Loops not clustered in ArchDB

1k5j_A_29 - AR
1k5j_A_44 - AR
1k5j_A_74 - AR
1k5j_A_95 - AR
1k5j_A_100 - AR
1k5j_A_61 - HA

1k5j A - percentage of sequence identity: 100
1k5j B - percentage of sequence identity: 100
1k5j C - percentage of sequence identity: 100
1k5j D - percentage of sequence identity: 100
1k5j E - percentage of sequence identity: 100