PDB: 1k82 Compound: formamidopyrimidine-DNA glycosylase Classification: HYDROLASE/DNA Entry date in PDB: 2002-06-14 Resolution [Å]: 2.10 R-Factor: 0.214

CHAIN: A SWISS-PROT/TREMBL: P05523    KEYWORD: 3D-structure    Complete proteome    DNA repair    Glycosidase    Hydrolase    Zinc    Zinc-finger    EC: 3.2.2.23 SCOP: a.156.1.2 All alpha proteins    S13-like H2TH domain    S13-like H2TH domain    Middle domain of MutM-like DNA repair proteins    DNA repair protein MutM (Fpg)    Escherichia coli SCOP: b.113.1.1 All beta proteins    N-terminal domain of MutM-like DNA repair proteins    N-terminal domain of MutM-like DNA repair proteins    N-terminal domain of MutM-like DNA repair proteins    DNA repair protein MutM (Fpg)    Escherichia coli SCOP: g.39.1.8 Small proteins    Glucocorticoid receptor-like (DNA-binding domain)    Glucocorticoid receptor-like (DNA-binding domain)    C-terminal, Zn-finger domain of MutM-like DNA repair proteins    DNA repair protein MutM (Fpg)    Escherichia coli GO:  zinc ion binding    DNA repair    CHAIN: B SWISS-PROT/TREMBL: P05523    KEYWORD: 3D-structure    Complete proteome    DNA repair    Glycosidase    Hydrolase    Zinc    Zinc-finger    EC: 3.2.2.23 SCOP: a.156.1.2 All alpha proteins    S13-like H2TH domain    S13-like H2TH domain    Middle domain of MutM-like DNA repair proteins    DNA repair protein MutM (Fpg)    Escherichia coli SCOP: b.113.1.1 All beta proteins    N-terminal domain of MutM-like DNA repair proteins    N-terminal domain of MutM-like DNA repair proteins    N-terminal domain of MutM-like DNA repair proteins    DNA repair protein MutM (Fpg)    Escherichia coli SCOP: g.39.1.8 Small proteins    Glucocorticoid receptor-like (DNA-binding domain)    Glucocorticoid receptor-like (DNA-binding domain)    C-terminal, Zn-finger domain of MutM-like DNA repair proteins    DNA repair protein MutM (Fpg)    Escherichia coli GO:  zinc ion binding    DNA repair    CHAIN: C SWISS-PROT/TREMBL: P05523    KEYWORD: 3D-structure    Complete proteome    DNA repair    Glycosidase    Hydrolase    Zinc    Zinc-finger    EC: 3.2.2.23 SCOP: a.156.1.2 All alpha proteins    S13-like H2TH domain    S13-like H2TH domain    Middle domain of MutM-like DNA repair proteins    DNA repair protein MutM (Fpg)    Escherichia coli SCOP: b.113.1.1 All beta proteins    N-terminal domain of MutM-like DNA repair proteins    N-terminal domain of MutM-like DNA repair proteins    N-terminal domain of MutM-like DNA repair proteins    DNA repair protein MutM (Fpg)    Escherichia coli SCOP: g.39.1.8 Small proteins    Glucocorticoid receptor-like (DNA-binding domain)    Glucocorticoid receptor-like (DNA-binding domain)    C-terminal, Zn-finger domain of MutM-like DNA repair proteins    DNA repair protein MutM (Fpg)    Escherichia coli GO:  zinc ion binding    DNA repair    CHAIN: D SWISS-PROT/TREMBL: P05523    KEYWORD: 3D-structure    Complete proteome    DNA repair    Glycosidase    Hydrolase    Zinc    Zinc-finger    EC: 3.2.2.23 SCOP: a.156.1.2 All alpha proteins    S13-like H2TH domain    S13-like H2TH domain    Middle domain of MutM-like DNA repair proteins    DNA repair protein MutM (Fpg)    Escherichia coli SCOP: b.113.1.1 All beta proteins    N-terminal domain of MutM-like DNA repair proteins    N-terminal domain of MutM-like DNA repair proteins    N-terminal domain of MutM-like DNA repair proteins    DNA repair protein MutM (Fpg)    Escherichia coli SCOP: g.39.1.8 Small proteins    Glucocorticoid receptor-like (DNA-binding domain)    Glucocorticoid receptor-like (DNA-binding domain)    C-terminal, Zn-finger domain of MutM-like DNA repair proteins    DNA repair protein MutM (Fpg)    Escherichia coli GO:  zinc ion binding    DNA repair

Image Source: PDB

Loops in ArchDB40 clusters

1k82_A_251 - HA => SUBCLASS : 2.1.1
1k82_A_57 - HA => SUBCLASS : 2.2.2
1k82_A_50 - HA => SUBCLASS : 2.3.1
1k82_A_92 - HA => SUBCLASS : 4.2.6
1k82_A_46 - AR => SUBCLASS : 2.1.3
1k82_A_66 - AR => SUBCLASS : 4.30.1
1k82_A_101 - AR => SUBCLASS : 5.15.1
1k82_A_139 - HH => SUBCLASS : 4.13.2
1k82_A_168 - HH => SUBCLASS : 12.1.1

Loops in ArchDB95 clusters

1k82_A_46 - AR => SUBCLASS : 2.1.1
1k82_A_66 - AR => SUBCLASS : 4.33.1
1k82_A_101 - AR => SUBCLASS : 5.19.1
1k82_A_139 - HH => SUBCLASS : 4.14.2
1k82_A_153 - HH => SUBCLASS : 9.7.1
1k82_A_168 - HH => SUBCLASS : 12.3.1
1k82_A_251 - HA => SUBCLASS : 2.1.1
1k82_A_57 - HA => SUBCLASS : 2.2.2
1k82_A_50 - HA => SUBCLASS : 2.3.1
1k82_A_92 - HA => SUBCLASS : 3.1.2

Loops in ArchDB-EC clusters

1k82_A_139 - HH => SUBCLASS : 4.9.2

Loops not clustered in ArchDB

1k82_A_101 - AR
1k82_A_76 - AR
1k82_A_76 - AR
1k82_A_46 - AR
1k82_A_66 - AR
1k82_A_21 - EH
1k82_A_112 - EH
1k82_A_92 - HA
1k82_A_57 - HA
1k82_A_50 - HA
1k82_A_251 - HA
1k82_A_191 - HE
1k82_A_38 - HE
1k82_A_3 - HE

1k82 A - percentage of sequence identity: 100
1k82 B - percentage of sequence identity: 100
1k82 C - percentage of sequence identity: 100
1k82 D - percentage of sequence identity: 100