PDB: 1kaf Compound: transcription regulatory protein mota Classification: TRANSCRIPTION Entry date in PDB: 2001-11-21 Resolution [Å]: 1.60 R-Factor: 0.226

CHAIN: A SWISS-PROT/TREMBL: P22915    KEYWORD: 3D-structure    Activator    DNA-binding    Transcription regulation    SCOP: d.199.1.1 Alpha and beta proteins (a+b)    DNA-binding C-terminal domain of the transcription factor MotA    DNA-binding C-terminal domain of the transcription factor MotA    DNA-binding C-terminal domain of the transcription factor MotA    DNA-binding C-terminal domain of the transcription factor MotA    Bacteriophage T4 GO:   CHAIN: B SWISS-PROT/TREMBL: P22915    KEYWORD: 3D-structure    Activator    DNA-binding    Transcription regulation    SCOP: d.199.1.1 Alpha and beta proteins (a+b)    DNA-binding C-terminal domain of the transcription factor MotA    DNA-binding C-terminal domain of the transcription factor MotA    DNA-binding C-terminal domain of the transcription factor MotA    DNA-binding C-terminal domain of the transcription factor MotA    Bacteriophage T4 GO:   CHAIN: C SWISS-PROT/TREMBL: P22915    KEYWORD: 3D-structure    Activator    DNA-binding    Transcription regulation    SCOP: d.199.1.1 Alpha and beta proteins (a+b)    DNA-binding C-terminal domain of the transcription factor MotA    DNA-binding C-terminal domain of the transcription factor MotA    DNA-binding C-terminal domain of the transcription factor MotA    DNA-binding C-terminal domain of the transcription factor MotA    Bacteriophage T4 GO:   CHAIN: D SWISS-PROT/TREMBL: P22915    KEYWORD: 3D-structure    Activator    DNA-binding    Transcription regulation    SCOP: d.199.1.1 Alpha and beta proteins (a+b)    DNA-binding C-terminal domain of the transcription factor MotA    DNA-binding C-terminal domain of the transcription factor MotA    DNA-binding C-terminal domain of the transcription factor MotA    DNA-binding C-terminal domain of the transcription factor MotA    Bacteriophage T4 GO:   CHAIN: E SWISS-PROT/TREMBL: P22915    KEYWORD: 3D-structure    Activator    DNA-binding    Transcription regulation    SCOP: d.199.1.1 Alpha and beta proteins (a+b)    DNA-binding C-terminal domain of the transcription factor MotA    DNA-binding C-terminal domain of the transcription factor MotA    DNA-binding C-terminal domain of the transcription factor MotA    DNA-binding C-terminal domain of the transcription factor MotA    Bacteriophage T4 GO:   CHAIN: F SWISS-PROT/TREMBL: P22915    KEYWORD: 3D-structure    Activator    DNA-binding    Transcription regulation    SCOP: d.199.1.1 Alpha and beta proteins (a+b)    DNA-binding C-terminal domain of the transcription factor MotA    DNA-binding C-terminal domain of the transcription factor MotA    DNA-binding C-terminal domain of the transcription factor MotA    DNA-binding C-terminal domain of the transcription factor MotA    Bacteriophage T4 GO:

Image Source: PDB

Loops in ArchDB40 clusters

1kaf_A_169 - HE => SUBCLASS : 1.3.1
1kaf_A_108 - HE => SUBCLASS : 2.1.1
1kaf_A_169 - HE => SUBCLASS : 2.2.2
1kaf_A_128 - HA => SUBCLASS : 2.1.1
1kaf_A_149 - HA => SUBCLASS : 4.4.1
1kaf_A_181 - HA => SUBCLASS : 4.4.1
1kaf_A_189 - EH => SUBCLASS : 2.3.2
1kaf_A_159 - EH => SUBCLASS : 3.4.3

Loops in ArchDB95 clusters

1kaf_A_189 - EH => SUBCLASS : 0.1.38
1kaf_A_189 - EH => SUBCLASS : 2.4.1
1kaf_A_159 - EH => SUBCLASS : 3.6.2
1kaf_A_169 - HE => SUBCLASS : 1.1.1
1kaf_A_169 - HE => SUBCLASS : 1.1.2
1kaf_A_108 - HE => SUBCLASS : 2.1.1
1kaf_A_128 - HA => SUBCLASS : 2.1.1
1kaf_A_149 - HA => SUBCLASS : 4.5.1
1kaf_A_181 - HA => SUBCLASS : 4.5.1

Loops not clustered in ArchDB

1kaf_A_137 - HA

1kaf A - percentage of sequence identity: 100
1kaf B - percentage of sequence identity: 100
1kaf C - percentage of sequence identity: 100
1kaf D - percentage of sequence identity: 100
1kaf E - percentage of sequence identity: 100
1kaf F - percentage of sequence identity: 100