PDB: 1kcf Compound: hypothetical 30.2 kd protein c25g10.02 in chromoso Classification: HYDROLASE Entry date in PDB: 2001-11-28 Resolution [Å]: 2.30 R-Factor: 0.238

CHAIN: A SWISS-PROT/TREMBL: Q10423    KEYWORD: 3D-structure    Endonuclease    Hydrolase    Magnesium    Metal-binding    Mitochondrion    Nuclease    Transit peptide    EC: 3.1.-.- SCOP: a.140.2.1 All alpha proteins    LEM/SAP HeH motif    SAP domain    SAP domain    Mitochondrial resolvase ydc2 N-terminal domain    Fission yeast (Schizosaccharomyces pombe) SCOP: c.55.3.7 Alpha and beta proteins (a/b)    Ribonuclease H-like motif    Ribonuclease H-like    Mitochondrial resolvase ydc2 catalytic domain    Mitochondrial resolvase ydc2 catalytic domain    Fission yeast (Schizosaccharomyces pombe) GO:  DNA binding    CHAIN: B SWISS-PROT/TREMBL: Q10423    KEYWORD: 3D-structure    Endonuclease    Hydrolase    Magnesium    Metal-binding    Mitochondrion    Nuclease    Transit peptide    EC: 3.1.-.- SCOP: a.140.2.1 All alpha proteins    LEM/SAP HeH motif    SAP domain    SAP domain    Mitochondrial resolvase ydc2 N-terminal domain    Fission yeast (Schizosaccharomyces pombe) SCOP: c.55.3.7 Alpha and beta proteins (a/b)    Ribonuclease H-like motif    Ribonuclease H-like    Mitochondrial resolvase ydc2 catalytic domain    Mitochondrial resolvase ydc2 catalytic domain    Fission yeast (Schizosaccharomyces pombe) GO:  DNA binding

Image Source: PDB

Loops in ArchDB40 clusters

1kcf_A_191 - HE => SUBCLASS : 2.4.1
1kcf_A_91 - HE => SUBCLASS : 3.1.2
1kcf_A_52 - HA => SUBCLASS : 4.2.1
1kcf_A_52 - HA => SUBCLASS : 5.1.4
1kcf_A_162 - EH => SUBCLASS : 1.1.19
1kcf_A_204 - EH => SUBCLASS : 2.1.1

Loops in ArchDB95 clusters

1kcf_A_162 - EH => SUBCLASS : 0.1.12
1kcf_A_162 - EH => SUBCLASS : 1.1.15
1kcf_A_204 - EH => SUBCLASS : 2.1.2
1kcf_A_191 - HE => SUBCLASS : 2.4.2
1kcf_A_91 - HE => SUBCLASS : 3.3.1
1kcf_A_91 - HE => SUBCLASS : 3.3.2
1kcf_A_52 - HA => SUBCLASS : 3.1.2
1kcf_A_52 - HA => SUBCLASS : 5.1.2

Loops in ArchDB-EC clusters

1kcf_A_91 - HE => SUBCLASS : 3.2.1

Loops not clustered in ArchDB

1kcf_A_65 - EH
1kcf_A_113 - EH
1kcf_A_42 - HA
1kcf_A_42 - HA
1kcf_A_52 - HA
1kcf_A_128 - HE
1kcf_A_26 - HE
1kcf_A_6 - HH
1kcf_A_209 - HH
1kcf_A_168 - HH

1kcf A - percentage of sequence identity: 100
1kcf B - percentage of sequence identity: 100