PDB: 1kol Compound: formaldehyde dehydrogenase Classification: OXIDOREDUCTASE Entry date in PDB: 2002-12-11 Resolution [Å]: 1.65 R-Factor: 0.171

CHAIN: A SWISS-PROT/TREMBL: P46154    KEYWORD: 3D-structure    Metal-binding    NAD    Oxidoreductase    Zinc    EC: 1.2.1.46 SCOP: b.35.1.2 All beta proteins    GroES-like    GroES-like    Alcohol dehydrogenase-like, N-terminal domain    Formaldehyde dehydrogenase    Pseudomonas putida SCOP: b.35.1.2 All beta proteins    GroES-like    GroES-like    Alcohol dehydrogenase-like, N-terminal domain    Formaldehyde dehydrogenase    Pseudomonas putida SCOP: c.2.1.1 Alpha and beta proteins (a/b)    NAD(P)-binding Rossmann-fold domains    NAD(P)-binding Rossmann-fold domains    Alcohol dehydrogenase-like, C-terminal domain    Formaldehyde dehydrogenase    Pseudomonas putida GO:  oxidoreductase activity    zinc ion binding    CHAIN: B SWISS-PROT/TREMBL: P46154    KEYWORD: 3D-structure    Metal-binding    NAD    Oxidoreductase    Zinc    EC: 1.2.1.46 SCOP: b.35.1.2 All beta proteins    GroES-like    GroES-like    Alcohol dehydrogenase-like, N-terminal domain    Formaldehyde dehydrogenase    Pseudomonas putida SCOP: b.35.1.2 All beta proteins    GroES-like    GroES-like    Alcohol dehydrogenase-like, N-terminal domain    Formaldehyde dehydrogenase    Pseudomonas putida SCOP: c.2.1.1 Alpha and beta proteins (a/b)    NAD(P)-binding Rossmann-fold domains    NAD(P)-binding Rossmann-fold domains    Alcohol dehydrogenase-like, C-terminal domain    Formaldehyde dehydrogenase    Pseudomonas putida GO:  oxidoreductase activity    zinc ion binding

Image Source: PDB

Loops in ArchDB40 clusters

1kol_A_3 - HA => SUBCLASS : 2.4.5
1kol_A_364 - EH => SUBCLASS : 1.1.7
1kol_A_212 - EH => SUBCLASS : 2.1.1
1kol_A_36 - EH => SUBCLASS : 2.2.1
1kol_A_138 - EH => SUBCLASS : 2.6.1
1kol_A_188 - EH => SUBCLASS : 3.2.1
1kol_A_88 - AR => SUBCLASS : 2.1.2

Loops in ArchDB95 clusters

1kol_A_364 - EH => SUBCLASS : 1.1.12
1kol_A_364 - EH => SUBCLASS : 1.2.2
1kol_A_212 - EH => SUBCLASS : 2.1.2
1kol_A_36 - EH => SUBCLASS : 2.2.1
1kol_A_138 - EH => SUBCLASS : 2.6.1
1kol_A_188 - EH => SUBCLASS : 3.5.1
1kol_A_149 - EH => SUBCLASS : 3.7.1
1kol_A_149 - EH => SUBCLASS : 3.7.2
1kol_A_88 - AR => SUBCLASS : 2.1.8
1kol_A_144 - HE => SUBCLASS : 0.1.4
1kol_A_220 - HE => SUBCLASS : 1.1.1
1kol_A_358 - HE => SUBCLASS : 1.2.8
1kol_A_372 - HE => SUBCLASS : 2.1.1
1kol_A_323 - HE => SUBCLASS : 2.1.3
1kol_A_196 - HE => SUBCLASS : 3.1.1
1kol_A_170 - HE => SUBCLASS : 6.4.1
1kol_A_3 - HA => SUBCLASS : 2.5.4

Loops in ArchDB-EC clusters

1kol_A_312 - HH => SUBCLASS : 6.12.1

Loops not clustered in ArchDB

1kol_A_121 - AR
1kol_A_88 - AR
1kol_A_13 - AR
1kol_A_121 - AR
1kol_A_13 - AR
1kol_A_94 - EH
1kol_A_232 - EH
1kol_A_255 - EH
1kol_A_289 - EH
1kol_A_332 - EH
1kol_A_69 - HA
1kol_A_69 - HA
1kol_A_3 - HA
1kol_A_101 - HE
1kol_A_47 - HE
1kol_A_281 - HE
1kol_A_242 - HE
1kol_A_340 - HH
1kol_A_154 - HH
1kol_A_161 - HH

1kol A - percentage of sequence identity: 100
1kol B - percentage of sequence identity: 100