PDB: 1l7d Compound: nicotinamide nucleotide transhydrogenase, subunit Classification: OXIDOREDUCTASE Entry date in PDB: 2002-11-20 Resolution [Å]: 1.81 R-Factor: 0.220

CHAIN: A SWISS-PROT/TREMBL: Q60164    KEYWORD: 3D-structure    Inner membrane    NAD    NADP    Oxidoreductase    Transmembrane    EC: 1.6.1.2 SCOP: c.2.1.4 Alpha and beta proteins (a/b)    NAD(P)-binding Rossmann-fold domains    NAD(P)-binding Rossmann-fold domains    Formate/glycerate dehydrogenases, NAD-domain    Nicotinamide nucleotide transhydrogenase dI component    Rhodospirillum rubrum SCOP: c.23.12.2 Alpha and beta proteins (a/b)    Flavodoxin-like    Formate/glycerate dehydrogenase catalytic domain-like    L-alanine dehydrogenase-like    Nicotinamide nucleotide transhydrogenase dI component    Rhodospirillum rubrum SCOP: c.23.12.2 Alpha and beta proteins (a/b)    Flavodoxin-like    Formate/glycerate dehydrogenase catalytic domain-like    L-alanine dehydrogenase-like    Nicotinamide nucleotide transhydrogenase dI component    Rhodospirillum rubrum GO:  oxidoreductase activity    electron transport    CHAIN: B SWISS-PROT/TREMBL: Q60164    KEYWORD: 3D-structure    Inner membrane    NAD    NADP    Oxidoreductase    Transmembrane    EC: 1.6.1.2 SCOP: c.2.1.4 Alpha and beta proteins (a/b)    NAD(P)-binding Rossmann-fold domains    NAD(P)-binding Rossmann-fold domains    Formate/glycerate dehydrogenases, NAD-domain    Nicotinamide nucleotide transhydrogenase dI component    Rhodospirillum rubrum SCOP: c.23.12.2 Alpha and beta proteins (a/b)    Flavodoxin-like    Formate/glycerate dehydrogenase catalytic domain-like    L-alanine dehydrogenase-like    Nicotinamide nucleotide transhydrogenase dI component    Rhodospirillum rubrum SCOP: c.23.12.2 Alpha and beta proteins (a/b)    Flavodoxin-like    Formate/glycerate dehydrogenase catalytic domain-like    L-alanine dehydrogenase-like    Nicotinamide nucleotide transhydrogenase dI component    Rhodospirillum rubrum GO:  oxidoreductase activity    electron transport    CHAIN: C SWISS-PROT/TREMBL: Q60164    KEYWORD: 3D-structure    Inner membrane    NAD    NADP    Oxidoreductase    Transmembrane    EC: 1.6.1.2 SCOP: c.2.1.4 Alpha and beta proteins (a/b)    NAD(P)-binding Rossmann-fold domains    NAD(P)-binding Rossmann-fold domains    Formate/glycerate dehydrogenases, NAD-domain    Nicotinamide nucleotide transhydrogenase dI component    Rhodospirillum rubrum SCOP: c.23.12.2 Alpha and beta proteins (a/b)    Flavodoxin-like    Formate/glycerate dehydrogenase catalytic domain-like    L-alanine dehydrogenase-like    Nicotinamide nucleotide transhydrogenase dI component    Rhodospirillum rubrum SCOP: c.23.12.2 Alpha and beta proteins (a/b)    Flavodoxin-like    Formate/glycerate dehydrogenase catalytic domain-like    L-alanine dehydrogenase-like    Nicotinamide nucleotide transhydrogenase dI component    Rhodospirillum rubrum GO:  oxidoreductase activity    electron transport    CHAIN: D SWISS-PROT/TREMBL: Q60164    KEYWORD: 3D-structure    Inner membrane    NAD    NADP    Oxidoreductase    Transmembrane    EC: 1.6.1.2 SCOP: c.2.1.4 Alpha and beta proteins (a/b)    NAD(P)-binding Rossmann-fold domains    NAD(P)-binding Rossmann-fold domains    Formate/glycerate dehydrogenases, NAD-domain    Nicotinamide nucleotide transhydrogenase dI component    Rhodospirillum rubrum SCOP: c.23.12.2 Alpha and beta proteins (a/b)    Flavodoxin-like    Formate/glycerate dehydrogenase catalytic domain-like    L-alanine dehydrogenase-like    Nicotinamide nucleotide transhydrogenase dI component    Rhodospirillum rubrum SCOP: c.23.12.2 Alpha and beta proteins (a/b)    Flavodoxin-like    Formate/glycerate dehydrogenase catalytic domain-like    L-alanine dehydrogenase-like    Nicotinamide nucleotide transhydrogenase dI component    Rhodospirillum rubrum GO:  oxidoreductase activity    electron transport

Image Source: PDB

Loops in ArchDB40 clusters

1l7d_A_309 - HA => SUBCLASS : 2.1.1
1l7d_A_366 - HA => SUBCLASS : 2.4.15
1l7d_A_347 - HA => SUBCLASS : 4.1.1
1l7d_A_56 - EH => SUBCLASS : 2.1.1
1l7d_A_197 - EH => SUBCLASS : 2.1.2
1l7d_A_197 - EH => SUBCLASS : 2.1.8
1l7d_A_174 - EH => SUBCLASS : 3.24.2

Loops in ArchDB95 clusters

1l7d_A_56 - EH => SUBCLASS : 2.1.1
1l7d_A_197 - EH => SUBCLASS : 2.1.5
1l7d_A_174 - EH => SUBCLASS : 3.34.1
1l7d_A_328 - HE => SUBCLASS : 0.1.12
1l7d_A_47 - HE => SUBCLASS : 1.1.1
1l7d_A_106 - HE => SUBCLASS : 1.1.1
1l7d_A_182 - HE => SUBCLASS : 1.1.1
1l7d_A_208 - HE => SUBCLASS : 1.1.1
1l7d_A_20 - HE => SUBCLASS : 1.1.1
1l7d_A_61 - HE => SUBCLASS : 2.2.4
1l7d_A_247 - HE => SUBCLASS : 2.2.5
1l7d_A_247 - HE => SUBCLASS : 2.3.4
1l7d_A_278 - HE => SUBCLASS : 5.8.1
1l7d_A_309 - HA => SUBCLASS : 2.1.1
1l7d_A_366 - HA => SUBCLASS : 2.5.13
1l7d_A_347 - HA => SUBCLASS : 4.1.1

Loops in ArchDB-EC clusters

1l7d_A_278 - HE => SUBCLASS : 5.13.1

Loops not clustered in ArchDB

1l7d_A_289 - AR
1l7d_A_168 - AR
1l7d_A_168 - AR
1l7d_A_289 - AR
1l7d_A_2 - EH
1l7d_A_353 - EH
1l7d_A_315 - EH
1l7d_A_260 - EH
1l7d_A_217 - EH
1l7d_A_118 - EH
1l7d_A_95 - EH
1l7d_A_32 - EH
1l7d_A_347 - HA
1l7d_A_309 - HA
1l7d_A_163 - HA
1l7d_A_70 - HA
1l7d_A_163 - HA
1l7d_A_70 - HA
1l7d_A_366 - HA
1l7d_A_361 - HE
1l7d_A_136 - HE

1f8g A - percentage of sequence identity: 100
1f8g B - percentage of sequence identity: 100
1f8g C - percentage of sequence identity: 100
1f8g D - percentage of sequence identity: 100
1hzz A - percentage of sequence identity: 100
1hzz B - percentage of sequence identity: 100
1l7d A - percentage of sequence identity: 100
1l7d B - percentage of sequence identity: 100
1l7d C - percentage of sequence identity: 100
1l7d D - percentage of sequence identity: 100
1l7e A - percentage of sequence identity: 100
1l7e B - percentage of sequence identity: 100
1l7e C - percentage of sequence identity: 100
1l7e D - percentage of sequence identity: 100
1nm5 A - percentage of sequence identity: 99
1nm5 B - percentage of sequence identity: 99
1ptj A - percentage of sequence identity: 100
1ptj B - percentage of sequence identity: 100
1u28 A - percentage of sequence identity: 100
1u28 B - percentage of sequence identity: 100
1u2d A - percentage of sequence identity: 100
1u2d B - percentage of sequence identity: 100
1u2g A - percentage of sequence identity: 100
1u2g B - percentage of sequence identity: 100
1xlt A - percentage of sequence identity: 100
1xlt B - percentage of sequence identity: 100
1xlt D - percentage of sequence identity: 100
1xlt E - percentage of sequence identity: 100
1xlt G - percentage of sequence identity: 100
1xlt H - percentage of sequence identity: 100