PDB: 1lfd Compound: ralgds Classification: COMPLEX (RALGDS/RAS) Entry date in PDB: 1999-05-04 Resolution [Å]: 2.10 R-Factor: 0.206

CHAIN: A SWISS-PROT/TREMBL: Q03386    KEYWORD: 3D-structure    Guanine-nucleotide releasing factor    SCOP: d.15.1.5 Alpha and beta proteins (a+b)    beta-Grasp (ubiquitin-like)    Ubiquitin-like    Ras-binding domain, RBD    Ral guanosine-nucleotide exchange factor, RalGDS    Rat (Rattus norvegicus) GO:  guanyl-nucleotide exchange factor activity    intracellular signaling cascade    signal transduction    small GTPase mediated signal transduction    CHAIN: B SWISS-PROT/TREMBL: P01112    KEYWORD: 3D-structure    Disease mutation    GTP-binding    Lipoprotein    Palmitate    Prenylation    Proto-oncogene    SCOP: c.37.1.8 Alpha and beta proteins (a/b)    P-loop containing nucleoside triphosphate hydrolases    P-loop containing nucleoside triphosphate hydrolases    G proteins    cH-p21 Ras protein    Human (Homo sapiens) GO:  GTP binding    small GTPase mediated signal transduction    CHAIN: C SWISS-PROT/TREMBL: Q03386    KEYWORD: 3D-structure    Guanine-nucleotide releasing factor    SCOP: d.15.1.5 Alpha and beta proteins (a+b)    beta-Grasp (ubiquitin-like)    Ubiquitin-like    Ras-binding domain, RBD    Ral guanosine-nucleotide exchange factor, RalGDS    Rat (Rattus norvegicus) GO:  guanyl-nucleotide exchange factor activity    intracellular signaling cascade    signal transduction    small GTPase mediated signal transduction    CHAIN: D SWISS-PROT/TREMBL: P01112    KEYWORD: 3D-structure    Disease mutation    GTP-binding    Lipoprotein    Palmitate    Prenylation    Proto-oncogene    SCOP: c.37.1.8 Alpha and beta proteins (a/b)    P-loop containing nucleoside triphosphate hydrolases    P-loop containing nucleoside triphosphate hydrolases    G proteins    cH-p21 Ras protein    Human (Homo sapiens) GO:  GTP binding    small GTPase mediated signal transduction

Image Source: PDB

Loops in ArchDB40 clusters

1lfd_A_63 - HA => SUBCLASS : 4.3.1
1lfd_A_32 - EH => SUBCLASS : 5.1.1
1lfd_A_74 - EH => SUBCLASS : 6.2.2

Loops in ArchDB95 clusters

1lfd_A_32 - EH => SUBCLASS : 5.1.1
1lfd_A_74 - EH => SUBCLASS : 6.2.1
1lfd_A_74 - EH => SUBCLASS : 6.2.2
1lfd_A_63 - HA => SUBCLASS : 4.2.1

Loops not clustered in ArchDB

1lfd_A_16 - HA
1lfd_A_42 - HE
1lfd_A_83 - HE

1ctq A - percentage of sequence identity: 99
1ef5 A - percentage of sequence identity: 65
1lfd A - percentage of sequence identity: 100
1lfd C - percentage of sequence identity: 100
1lxd A - percentage of sequence identity: 100
1lxd B - percentage of sequence identity: 100
1rax A - percentage of sequence identity: 90
2rgf - - percentage of sequence identity: 90